View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3184_high_6 (Length: 595)
Name: NF3184_high_6
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 386
Target Start/End: Complemental strand, 10425692 - 10425317
Alignment:
| Q |
11 |
cagagaatggccaacataattaatcttctgccctgtttggctgaacacataatcaaaaacagcaggtagatcataggtaacaagttcatcccatgaccaa |
110 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10425692 |
cagagaatggccaacgtaattaatcttctgccctgtttggctgaacacataatcaaaaacagcaggtagatcatagataacaagttcatcccatgaccaa |
10425593 |
T |
|
| Q |
111 |
ttccaaaaggcctgtcatatttataacacagaaagtgtcaattaataaatggnnnnnnnnnnnnnnnnngacaaagaaaaatttatgtattagagaaggt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10425592 |
ttccaaaaggcctgtcatatttataacacagaaagtgtcaattaataaatggttttctttttcttttttgacaaagaaaaatttatgtattagagaaggt |
10425493 |
T |
|
| Q |
211 |
acactctcatgcaaagctagaagatacactaatttcattaaggattattacattaaagggnnnnnnnncaaataaatttagt-acttcnnnnnnncattt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| | || ||||| |
|
|
| T |
10425492 |
acactctcatgcaaagctagaagatacactaatttcattaagggttattacattaaaggg-tttttttcaaataaatttagtaatttgaaaaaaacattt |
10425394 |
T |
|
| Q |
310 |
tccactctactttatttctaacagttttaatttgtaacaaccagataataaatggtaacaataaaattggtcgtcct |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
10425393 |
tccactctactttatttctaacagttttaatttgtaacaaccacataataaatgctaacaataaaattggtcttcct |
10425317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 403 - 502
Target Start/End: Complemental strand, 10425267 - 10425167
Alignment:
| Q |
403 |
aattggtctcaa-tacttacactgatctctcaacaataaaaaatttcatttggatcatcaataatttcaagcattgacaaactttgtcatttctattaga |
501 |
Q |
| |
|
|||||||||||| |||||| |||| ||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
10425267 |
aattggtctcaaatacttaaactggtctctcaacaataaaaaatatcatttggatcatcaataattacaagtattgacaaactttgtcatttctattaga |
10425168 |
T |
|
| Q |
502 |
a |
502 |
Q |
| |
|
| |
|
|
| T |
10425167 |
a |
10425167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 512 - 549
Target Start/End: Complemental strand, 10425179 - 10425142
Alignment:
| Q |
512 |
atttctatcagaagcaactttaaataagtagttggatt |
549 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10425179 |
atttctattagaagcaactttaaataagtagttggatt |
10425142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 562 - 595
Target Start/End: Complemental strand, 10425117 - 10425084
Alignment:
| Q |
562 |
gttggattaaaataaataatgaatttcaattaaa |
595 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
10425117 |
gttggattaaaataaataataaatttcaattaaa |
10425084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University