View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_high_61 (Length: 240)
Name: NF3184_high_61
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_high_61 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 13316006 - 13316129
Alignment:
| Q |
99 |
taatagcatcatcagtaacaacagttgcatcccgaggtatgacaattgcaggaacattgttgttattagtaacaacttttttaacaatagtatcaacatt |
198 |
Q |
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| T |
13316006 |
taatagcatcatcagtaacaacagttgcatcccaaggtatgacaattgcaggaacattgttgttattagtaacaacttttttaacaatagtatcaacatt |
13316105 |
T |
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| Q |
199 |
ttccacattagtaataacatatga |
222 |
Q |
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| T |
13316106 |
ttccacattagtaataaaatatga |
13316129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 13308534 - 13308412
Alignment:
| Q |
99 |
taatagcatcatcagtaacaacagttgcatcccgaggtatgacaattgcaggaacattgttgttattagtaacaacttttttaacaatagtatcaacatt |
198 |
Q |
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| T |
13308534 |
taatagcatcatcagtaacaacagttgcatcccgtggtatgacatttgcaagaacgttgtcattattagtaacaacttttttaacagtagtgtcaacatt |
13308435 |
T |
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| Q |
199 |
ttccacattagtaataacatatg |
221 |
Q |
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||| ||||||||||||||||||| |
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| T |
13308434 |
ttcaacattagtaataacatatg |
13308412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 13315729 - 13315812
Alignment:
| Q |
4 |
ttgttgttcttcccttgagtcaaatattcctcaacaagaccaaccatgtactgaactgggacacacctatatatgaggaggcactatt |
91 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| ||| |||| ||||||||||||||||| |
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| T |
13315729 |
ttgttgttcttcccttgagtcaaatattcctcaacaagatcgtccatgtattgaactgcgacgcacc----tatgaggaggcactatt |
13315812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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