View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_high_68 (Length: 236)
Name: NF3184_high_68
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_high_68 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 48533054 - 48532823
Alignment:
| Q |
1 |
ttctggtcgttgttcttccattccaattacttttaacttaatcaattatacatgaatgtatgtttcttatagctttcatttaattttgtggctttcttta |
100 |
Q |
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| T |
48533054 |
ttctggtcgttgttcttctattccaattacttttaacttaatcaattatacatgaatgtatgtttcttatagctttcatttaattttgtggctttcttta |
48532955 |
T |
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| Q |
101 |
ttaagtaatcgttacaagctccattttttcggttctaagcttgaatggagcttagtcaagtgcttnnnnnnntcatgtttatccaactattagtatttta |
200 |
Q |
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| T |
48532954 |
ttaagtgatcgttccaagctccattttttcggttctaagcttgaatggagcttaggcaagtgcttaaaaaaatcatgttcatccaactattagtatttta |
48532855 |
T |
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| Q |
201 |
tgcaaattaaattcttcctcttcttttcactc |
232 |
Q |
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||||||||||||||||||||||||||| |||| |
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| T |
48532854 |
tgcaaattaaattcttcctcttctttttactc |
48532823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 48535893 - 48535797
Alignment:
| Q |
4 |
tggtcgttgttcttccattccaattacttttaacttaatcaattatacatgaatgtatgtttcttatagctttcatttaattttgtggctttctttat |
101 |
Q |
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|||| |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||| |
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| T |
48535893 |
tggtggttgttcttccattccaattacttttcact-aatcaattatatatgaatgtatgattcttatagctttcatttaattgtgtggttttctttat |
48535797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 213
Target Start/End: Complemental strand, 48535745 - 48535654
Alignment:
| Q |
123 |
attttttcggttctaagcttgaatggagcttagtcaagtgcttnnnnnnntcatgtttatccaa-ctattagtattttatgcaaattaaatt |
213 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||| | ||||| |||||| ||||||||||||||| ||||||||||| |
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| T |
48535745 |
atttttttggttctaagcttgaatggagcttaggcaagtgcttaaaaaaataatgttcatccaacctattagtattttattcaaattaaatt |
48535654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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