View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3184_high_71 (Length: 229)

Name: NF3184_high_71
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3184_high_71
NF3184_high_71
[»] chr6 (1 HSPs)
chr6 (1-221)||(11414776-11414995)
[»] chr7 (2 HSPs)
chr7 (98-167)||(43846888-43846957)
chr7 (97-167)||(28289910-28289979)
[»] chr2 (3 HSPs)
chr2 (98-184)||(38740433-38740519)
chr2 (4-62)||(8163918-8163976)
chr2 (87-146)||(8163836-8163895)
[»] chr4 (2 HSPs)
chr4 (97-167)||(22648628-22648698)
chr4 (119-167)||(11854841-11854889)
[»] chr1 (2 HSPs)
chr1 (97-167)||(38687570-38687640)
chr1 (126-175)||(38469286-38469335)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 11414776 - 11414995
Alignment:
Q  1 ggaataagaataaatggggtgggttccactaaaagaaagaaaaaatattaaaattcaatttttcaannnnnnnnnncttcttatttctaacctgttgcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||           ||||||||||||||||||||||||    
T  11414776 ggaataagaataaatggggtgggttccactaaaagaaagaaaaaatattaaaaatcaatttttca-gtttttttttcttcttatttctaacctgttgcaa 11414874  T
Q  101 ctgccacctgttctgggaaaaggggactttcccatggtggaaaaaactcccctttctcaggctaaacttcacctacattaggtagtggaaatcttctcat 200  Q
    ||| ||||||| |||||||||||||| ||| |||| |||| ||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||    
T  11414875 ctgtcacctgtcctgggaaaaggggatttttccatagtgggaaaaactccccttttccaggctaaacttcacctacattagttagtggaaatcttctcat 11414974  T
Q  201 gactatgtatatacaatttag 221  Q
    || ||||||||||||||||||    
T  11414975 gagtatgtatatacaatttag 11414995  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 43846888 - 43846957
Alignment:
Q  98 caactgccacctgttctgggaaaaggggactttcccatggtggaaaaaactcccctttctcaggctaaac 167  Q
    |||||||||||||| |||  ||||| | ||||||||||||||| ||||||||||||||| ||||||||||    
T  43846888 caactgccacctgtcctgaaaaaagagaactttcccatggtgggaaaaactcccctttcccaggctaaac 43846957  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 28289979 - 28289910
Alignment:
Q  97 gcaactgccacctgttctgggaaaaggggactttcccatggtggaaaaaactcccctttctcaggctaaac 167  Q
    ||||| |||||||||||||  |||| |||||||||||||||||| |||||| ||  |||| ||||||||||    
T  28289979 gcaaccgccacctgttctga-aaaatgggactttcccatggtgggaaaaacaccattttcccaggctaaac 28289910  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 184
Target Start/End: Complemental strand, 38740519 - 38740433
Alignment:
Q  98 caactgccacctgttctgggaaaaggggactttcccatggtggaaaaaactcccctttctcaggctaaacttcacctacattaggta 184  Q
    |||||||||||||| |||  ||||| | ||||||||||||||| ||||||||||||||| ||| ||||||  |||||| ||| ||||    
T  38740519 caactgccacctgtcctgaaaaaagagaactttcccatggtgggaaaaactcccctttcccagactaaacgccacctagatttggta 38740433  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 8163976 - 8163918
Alignment:
Q  4 ataagaataaatggggtgggttccactaaaagaaagaaaaaatattaaaattcaatttt 62  Q
    |||||||||||||||||||||||||||  |||||| |||||| ||||||| ||| ||||    
T  8163976 ataagaataaatggggtgggttccactggaagaaacaaaaaacattaaaaatcattttt 8163918  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 8163895 - 8163836
Alignment:
Q  87 ctaacctgttg-caactgccacctgttctgggaaaaggggactttcccatggtggaaaaaa 146  Q
    ||||||||||| ||||||||||||||||| | ||||| ||||||||| |||||||||||||    
T  8163895 ctaacctgttgtcaactgccacctgttctag-aaaagaggactttcctatggtggaaaaaa 8163836  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 22648698 - 22648628
Alignment:
Q  97 gcaactgccacctgttctgggaaaaggggactttcccatggtggaaaaaactcccctttctcaggctaaac 167  Q
    ||||| ||||||||| |||  |||| |||||||||||||||||| |||||| ||  |||| ||||||||||    
T  22648698 gcaaccgccacctgtcctgaaaaaatgggactttcccatggtgggaaaaacaccattttcccaggctaaac 22648628  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 11854841 - 11854889
Alignment:
Q  119 aaaggggactttcccatggtggaaaaaactcccctttctcaggctaaac 167  Q
    |||||||||||||||||||||| |||||| ||  |||| ||||||||||    
T  11854841 aaaggggactttcccatggtgggaaaaacaccattttcccaggctaaac 11854889  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 38687640 - 38687570
Alignment:
Q  97 gcaactgccacctgttctgggaaaaggggactttcccatggtggaaaaaactcccctttctcaggctaaac 167  Q
    ||||| ||||||||| |||  |||| |||||||||||||||||| |||||| ||  |||| ||||||||||    
T  38687640 gcaaccgccacctgtcctgaaaaaatgggactttcccatggtgggaaaaacaccattttcccaggctaaac 38687570  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 38469286 - 38469335
Alignment:
Q  126 actttcccatggtggaaaaaactcccctttctcaggctaaacttcaccta 175  Q
    ||||||||||||||||||||| |  |||||| || |||||||||||||||    
T  38469286 actttcccatggtggaaaaaattagcctttcccatgctaaacttcaccta 38469335  T

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