View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_high_77 (Length: 211)
Name: NF3184_high_77
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_high_77 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 2329792 - 2329988
Alignment:
| Q |
1 |
tccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2329792 |
tccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcct |
2329891 |
T |
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| Q |
101 |
atcatcaatcttaatatcggttctcgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactcctccgtcttctctg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2329892 |
atcatcaatcttaatatcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttcaaaactcctccgtcttctctg |
2329988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 2 - 180
Target Start/End: Original strand, 2326078 - 2326256
Alignment:
| Q |
2 |
ccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtccta |
101 |
Q |
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|||||||| || || |||||||||||||| |||||||| ||||||||||| |||| |||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
2326078 |
ccaccacacatccccatcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtccta |
2326177 |
T |
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| Q |
102 |
tcatcaatcttaatatcggttctcgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
180 |
Q |
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||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2326178 |
tcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccctcgttcaaaa |
2326256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 2292919 - 2293099
Alignment:
| Q |
17 |
atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata |
116 |
Q |
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| T |
2292919 |
atcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccata |
2293018 |
T |
|
| Q |
117 |
tcggttctcgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactcctccgtcttctctg |
197 |
Q |
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||||||||||||||||||||||||| ||||| | ||||||||||||| | ||||||||||||||| ||| ||||||||| |
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| T |
2293019 |
tcggttctcgaccttccattttcattaacgaccatactctggcccaccatgttctcgttcaaaactcatccatcttctctg |
2293099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 2320239 - 2320405
Alignment:
| Q |
17 |
atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata |
116 |
Q |
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|
|||||||||| | |||||| ||| | ||||||| || |||| |||||||||||||||| |||||| ||||||||||||||||||||||||| | | ||| |
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| T |
2320239 |
atcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccata |
2320338 |
T |
|
| Q |
117 |
tcggttctcgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactc |
183 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||| ||||| | ||||||||||||||| |
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| T |
2320339 |
tcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactc |
2320405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 2309250 - 2309416
Alignment:
| Q |
17 |
atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata |
116 |
Q |
| |
|
|||||||||| | |||||| ||| | ||||||| || |||| |||||||||||||||| |||||| ||||||||||||||||||||||||| | | ||| |
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| T |
2309250 |
atcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcattgtccata |
2309349 |
T |
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| Q |
117 |
tcggttctcgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactc |
183 |
Q |
| |
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||||||||| |||||||||||||||| ||||| ||||||||| ||||| | ||||||||||||||| |
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| T |
2309350 |
tcggttctcaaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactc |
2309416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 41 - 183
Target Start/End: Original strand, 2302562 - 2302704
Alignment:
| Q |
41 |
cgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaatatcggttctcgaccttccattttca |
140 |
Q |
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|||||| ||| | |||| |||||||||||||||| |||||| ||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||| |
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| T |
2302562 |
cgaaaaccatcctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactctccacatcggttctcgaccttccattttca |
2302661 |
T |
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| Q |
141 |
tctccgaccgtgctctggcccaccacgctctcgttcaaaactc |
183 |
Q |
| |
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|| |||| ||||||||||||||| | ||||||||||||||| |
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| T |
2302662 |
tcgatgaccatgctctggcccaccatgttctcgttcaaaactc |
2302704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 2350092 - 2350288
Alignment:
| Q |
1 |
tccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcct |
100 |
Q |
| |
|
|||||| ||||| || || |||||||| |||| |||||| |||||||||| |||| || ||||||||| ||| ||| || || ||||| |||||||| |
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| T |
2350092 |
tccaccgcatatccccattatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcct |
2350191 |
T |
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| Q |
101 |
atcatcaatcttaatatcggttctcgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactcctccgtcttctctg |
197 |
Q |
| |
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||||||| ||| || ||| ||| ||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||| || ||||||||| |
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| T |
2350192 |
atcatcactctcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaactcagccatcttctctg |
2350288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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