View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_high_78 (Length: 209)
Name: NF3184_high_78
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_high_78 |
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| [»] scaffold0651 (2 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 1562 - 1730
Alignment:
| Q |
13 |
atcaacaacttctcaagcttgtctttggataaaagagaaaagattgtgcaaaggggtctcaagcataaattcatcactccttttagactcgcattcgttt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1562 |
atcaacaacttctcaagcttgtctttggataaaagagaaaagattgtacaaaggggtctcaagcataaattcctcactccttttagactcgcattcgttt |
1661 |
T |
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| Q |
113 |
acatcaaaatcatatgcctctttgttttcttctcttgggtatatattatttcttcaaccttgctgcaaa |
181 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1662 |
acatcaaaatcctatgcctctttgttttcttctcttgggtatatattatttcttcaaccttgctacaaa |
1730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 4263 - 4083
Alignment:
| Q |
13 |
atcaacaacttctcaagcttgtctttggataaaagagaaaagattgtgcaaaggggtctcaagcataaattcatcactccttttagactcgcattcgttt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| || ||| |||||||||||||||||||||||| || |
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| T |
4263 |
atcaacaacttctcaagcttgtctttggataaaagagaaaagattgtgcagagggctctcaagcttaggttcctcactccttttagactcgcattcgctt |
4164 |
T |
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| Q |
113 |
acatcaaaatcatatgcctctttgttttcttctcttgggtatatattatttcttcaaccttgctgcaaagtgccattttgt |
193 |
Q |
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| T |
4163 |
acatcaaagtcctatgtctctttgttttcttctcttgggtatatattatttcttcaaccttgctgcaaagtgccattttgt |
4083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 31331648 - 31331816
Alignment:
| Q |
13 |
atcaacaacttctcaagcttgtctttggataaaagagaaaagattgtgcaaaggggtctcaagcataaattcatcactccttttagactcgcattcgttt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31331648 |
atcaacaacttctcaagcttgtctttggataaaagagaaaagattgtacaaaggggtctcaagcataaattcctcactccttttagactcgcattcgttt |
31331747 |
T |
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| Q |
113 |
acatcaaaatcatatgcctctttgttttcttctcttgggtatatattatttcttcaaccttgctgcaaa |
181 |
Q |
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| T |
31331748 |
acatcaaaatcctatgcctctttgttttcttctcttgggtatatattatttcttcaaccttgctacaaa |
31331816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 31319407 - 31319587
Alignment:
| Q |
13 |
atcaacaacttctcaagcttgtctttggataaaagagaaaagattgtgcaaaggggtctcaagcataaattcatcactccttttagactcgcattcgttt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| || ||| |||||||||||||||||||||||| || |
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| T |
31319407 |
atcaacaacttctcaagcttgtctttggataaaagagaaaagattgtgcagagggctctcaagcttaggttcctcactccttttagactcgcattcgctt |
31319506 |
T |
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| Q |
113 |
acatcaaaatcatatgcctctttgttttcttctcttgggtatatattatttcttcaaccttgctgcaaagtgccattttgt |
193 |
Q |
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|||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31319507 |
acatcaaagtcctatgtctctttgttttcttctcttgggtatatattatttcttcaaccttgctgcaaagtgccattttgt |
31319587 |
T |
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