View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_high_8 (Length: 553)
Name: NF3184_high_8
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 444 - 541
Target Start/End: Original strand, 2377301 - 2377400
Alignment:
| Q |
444 |
atcctacagtttggcactcattcgtgtgcaggata-tacaactttacctcttgcttagtgccgaaattacacaaacgcc-tccatgcacttcaccatatt |
541 |
Q |
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| T |
2377301 |
atcctacagtttggcactcattcgtgtgctggctggtgcaactttacctctagctcagtgccgaaattacacaaacgccttccatgcatttcaccatatt |
2377400 |
T |
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Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 358 - 446
Target Start/End: Original strand, 2377195 - 2377280
Alignment:
| Q |
358 |
caaagggatttacattagctttgacaatgttggggggaaacatgcataaggaaacccttcttaacacgagaaaacgatgttgaagtatc |
446 |
Q |
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| T |
2377195 |
caaaggcattgacattaactttgacaatgttggggg--aacatgcataaggaaacccttcttaacaagagaaaacg-tgttgaagtatc |
2377280 |
T |
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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 2376357 - 2376397
Alignment:
| Q |
213 |
tggattatttctccttaaatactacctttataactaatttt |
253 |
Q |
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| T |
2376357 |
tggattatttttcccttaatactacctttataactaatttt |
2376397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 358 - 444
Target Start/End: Complemental strand, 1522829 - 1522745
Alignment:
| Q |
358 |
caaagggatttacattagctttgacaatgttggggggaaacatgcataaggaaacccttcttaacacgagaaaacgatgttgaagta |
444 |
Q |
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| T |
1522829 |
caaaggcattgacattaactttgacaatgttggggg--aacatgcataaggaaacccttattaacacgagaaaatgttgttgaagta |
1522745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 309 - 368
Target Start/End: Complemental strand, 1523785 - 1523727
Alignment:
| Q |
309 |
tgtctgttgaaaggacttcctttgctccctaggtcattcttggaagcttcaaagggattt |
368 |
Q |
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| T |
1523785 |
tgtctgttgaaaggacttcctt-gctccctaggtcattcttggaagcttcaaagggattt |
1523727 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 453 - 522
Target Start/End: Original strand, 35726310 - 35726380
Alignment:
| Q |
453 |
tttggcactcattcgtgtgcaggat-atacaactttacctcttgcttagtgccgaaattacacaaacgcct |
522 |
Q |
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| T |
35726310 |
tttggcactcattcgtatgcaggctgatgcaactttacctcttgctcagcgccgaaactacacaaacgcct |
35726380 |
T |
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