View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_low_1 (Length: 813)
Name: NF3184_low_1
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 550; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 115 - 781
Target Start/End: Complemental strand, 41787602 - 41786915
Alignment:
| Q |
115 |
caacttttctggataattgttaattgcaatcatagttttgttcacattgctaaatccattggattttcacataaaaaaggatgaaaaatgaagacagagt |
214 |
Q |
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| T |
41787602 |
caacttttctggataattgttaattgcaatcatagttttgttcacattgctaaatccattggattttcacataaaaaaggatgaaaaatgaagacagagt |
41787503 |
T |
|
| Q |
215 |
taacggtagttgcctgcacattaggtttgcaaataatgggtgcatgcatacccttaaagggtacaatcgtttccctacatatgttcttgagagttcttta |
314 |
Q |
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| T |
41787502 |
taacggtagttgcctgcacattaggtttgcgaa-aatgggtgcatgcatacctttaaagggtacaatcgtttccctacatatgttcttgagagttcttta |
41787404 |
T |
|
| Q |
315 |
aatttgcatggagccgccaatggttgcatggttattatatgcaaggtatgcgattaagtaaaaccaaaataaactcatttgttgcatcacataataaaaa |
414 |
Q |
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| T |
41787403 |
aatttgcatggagccgccaatggttgcatggttattatatgcaaggtatgcgattaagtaaaaccaaaataaactcatttgttgcatcacataataaaaa |
41787304 |
T |
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| Q |
415 |
aggagtatttattattttggaacataaaagacaaattgaaac-----------------acttgaaattgaaaacttaaaacagtacatataggacagtt |
497 |
Q |
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| T |
41787303 |
aggagtatttgttattttggaacataaaagacaaattgaaacatatagaaaatacaaagacttgaaattgaaaacttaaaacagtacatataggacagtt |
41787204 |
T |
|
| Q |
498 |
aaagatgtggattggaagcagaatctaatacatgaaccaaattgctagtattttaacattattaactttgacaaatttaaaacgggctatatctcc--at |
595 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
41787203 |
aaagatgtggattggaagcagaatcaaatacatgaaccaaattgctagtattttaatattattaactttgacaaatttaaaacgggctatatctccatat |
41787104 |
T |
|
| Q |
596 |
atttgagttgactctgggtacaaaattcattccctccatctcattcctattttggtgctccttcttggctag-nnnnnnnccttccagtctttaaccatt |
694 |
Q |
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| T |
41787103 |
atttgagttgactctgggtacaaaattcattccctccatctcattcctattttggtgctccttcttggctagttttttttccttccagtctttaaccatt |
41787004 |
T |
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| Q |
695 |
tggaggaaattctatttgaggtgtgtcacactaaatgttagtatgtac--ctctcccaatcacaatttcaattgattccacaggttctg |
781 |
Q |
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| T |
41787003 |
tggaggaaattctatttgaggtgtgtcacactaaatgttagtatgtacctctctcccaatcacaatttcaattgattccacacgttctg |
41786915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 41787845 - 41787733
Alignment:
| Q |
1 |
ttaacacgtggttcgttagtggaggagcaggatagatcaaatgagctcacaagtatattcagtacattgctattttttctctttccttgccttagtcgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41787845 |
ttaacacgtggttcgttagtggaggagcaggatagatcaaatgagctcacaagtatattcagtacattgctattttttctctttccttgccttagtcgta |
41787746 |
T |
|
| Q |
101 |
agatatgcaaccc |
113 |
Q |
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| T |
41787745 |
agatatgcaaccc |
41787733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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