View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_low_15 (Length: 473)
Name: NF3184_low_15
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 43596368 - 43596600
Alignment:
| Q |
1 |
gaaagcaagtgattcttgattagatttagaaagctgcatcacatcaccgaaagcagtaatatgaacaggacctttaatcccgttcgctctaacggcgtca |
100 |
Q |
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| T |
43596368 |
gaaagcaagtgattcttgattagatttagaaagctgcatcacatcaccgaaagcagtaatatgaacaggacctttaatcccgttcgctctaacggcgtca |
43596467 |
T |
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| Q |
101 |
gtgattgacggggctactctggaaacgttaaggccgaccggcacgctgcagttctcgaaatcccaccaaacagaaaccctaacgtttcgtgactcgtcat |
200 |
Q |
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| T |
43596468 |
gtgattgacggggctactctggaaacgttaaggccgaccggcacgctgcagttctcgaaatcccaccacacagaaaccctaacgtttcgtgactcgtcat |
43596567 |
T |
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| Q |
201 |
cgagacgcttccagtgagaatacgacggagccg |
233 |
Q |
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| T |
43596568 |
cgagacgcttccagtgagaatacgacggagccg |
43596600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 319 - 430
Target Start/End: Original strand, 43596683 - 43596799
Alignment:
| Q |
319 |
taatagattcttttggagaagatgtctcattgttagttcgttgatcgaatcagaaatggatgcgatgcggtggatt----actccatctgcgt-aaagtg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
43596683 |
taatagattcttttggagaagatgtctcattgttagttcgttgatcgaatcagaaatggatgcgatgcggtggattactcactccatctgcgtaaaagtg |
43596782 |
T |
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| Q |
414 |
gaacagaaatgaaaatg |
430 |
Q |
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| T |
43596783 |
gaacagaaatgaaaatg |
43596799 |
T |
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