View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3184_low_16 (Length: 461)

Name: NF3184_low_16
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3184_low_16
NF3184_low_16
[»] chr6 (8 HSPs)
chr6 (18-206)||(26454614-26454803)
chr6 (18-206)||(26504843-26505031)
chr6 (204-317)||(26505067-26505180)
chr6 (207-317)||(26454846-26454956)
chr6 (411-461)||(2277262-2277312)
chr6 (411-461)||(921205-921255)
chr6 (340-379)||(26455404-26455443)
chr6 (382-411)||(26455459-26455488)
[»] chr8 (2 HSPs)
chr8 (409-461)||(27018837-27018889)
chr8 (411-461)||(9061978-9062028)
[»] chr7 (2 HSPs)
chr7 (409-461)||(24773397-24773449)
chr7 (411-461)||(35350183-35350233)
[»] chr5 (4 HSPs)
chr5 (406-461)||(2416271-2416326)
chr5 (410-461)||(39879041-39879092)
chr5 (411-461)||(39348753-39348803)
chr5 (410-461)||(33826378-33826429)
[»] chr2 (1 HSPs)
chr2 (411-461)||(27313617-27313667)
[»] chr1 (3 HSPs)
chr1 (411-461)||(38443873-38443923)
chr1 (410-461)||(4014594-4014645)
chr1 (409-461)||(25882702-25882754)
[»] scaffold0531 (1 HSPs)
scaffold0531 (411-457)||(10948-10994)
[»] chr3 (3 HSPs)
chr3 (411-461)||(16652841-16652891)
chr3 (411-461)||(19011736-19011786)
chr3 (411-461)||(7604743-7604793)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 7e-84; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 26454614 - 26454803
Alignment:
Q  18 tggagaaatttcttatttatcagaagtaagactttgcttcactgcaagcaaagatccacagtacattaattgtaatggacatggttctcttttcggtcat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   |||||||||||||||||||||    
T  26454614 tggagaaatttcttatttatcagaagtaagactttgcttcactgcaagcaaagatccacagtacattaattgtgatcaccatggttctcttttcggtcat 26454713  T
Q  118 gaatgcgaagctgaggtgcatttctgaaaatttcataataacat-ataaataaaagacggagcaatatagtgcttcggttcctttctagt 206  Q
    |||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  26454714 gaatgcgatgctgaggtgcatttctgaaaatttcataataatataataaataaaagacggagcaatatagtgcttcggttcctttctagt 26454803  T

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Target: chr6; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 26504843 - 26505031
Alignment:
Q  18 tggagaaatttcttatttatcagaagtaagactttgcttcactgcaagcaaagatccacagtacattaattgtaatggacatggttctcttttcggtcat 117  Q
    |||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  26504843 tggacaaatttcttatttattagaagtaagattttgcttcactgcaagcaaagatccacagtacattaattgtgatggacatggttctcttttcggtcaa 26504942  T
Q  118 gaatgcgaagctgaggtgcatttctgaaaatttcataataacatataaataaaagacggagcaatatagtgcttcggttcctttctagt 206  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  26504943 gaatgcgatgctgaggtgcatttctgaaaatttcataataatatataaataaaagacggagcaatatagtgcttcggttcctttttagt 26505031  T

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Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 204 - 317
Target Start/End: Original strand, 26505067 - 26505180
Alignment:
Q  204 agtaaacgaatcaaacacatatataatatgtatctgaaacgaattttggattctttttacatataatcttatgtataaaacagaataagttgagattttg 303  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||| || |    
T  26505067 agtaaacgaatcaaacatatatataatatgtatctgaaacgagttttggattctttttacatagaatcttatgtataaaacagaataagtttagagttcg 26505166  T
Q  304 ctgaaatcatggtt 317  Q
    ||||||||||||||    
T  26505167 ctgaaatcatggtt 26505180  T

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Target: chr6; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 207 - 317
Target Start/End: Original strand, 26454846 - 26454956
Alignment:
Q  207 aaacgaatcaaacacatatataatatgtatctgaaacgaattttggattctttttacatataatcttatgtataaaacagaataagttgagattttgctg 306  Q
    |||| ||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||| ||||||| |||    
T  26454846 aaacaaatcaaacatatatataatatgtatctgaaacgagttttggattcttttcacatagaatcttatttataaaacagaataagtttagattttactg 26454945  T
Q  307 aaatcatggtt 317  Q
    |||||||||||    
T  26454946 aaatcatggtt 26454956  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 411 - 461
Target Start/End: Complemental strand, 2277312 - 2277262
Alignment:
Q  411 actagattactaacccgtgcgccgcacgggatttatgagatgaaaaacatt 461  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2277312 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatt 2277262  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 411 - 461
Target Start/End: Complemental strand, 921255 - 921205
Alignment:
Q  411 actagattactaacccgtgcgccgcacgggatttatgagatgaaaaacatt 461  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  921255 actagattactaacccgtgcgccgcacgagttttatgagatgaaaaacatt 921205  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 379
Target Start/End: Original strand, 26455404 - 26455443
Alignment:
Q  340 aagattttcatttatatatttacattctctctaagtacat 379  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  26455404 aagattttcatttatatatttacattgtccctaagtacat 26455443  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 411
Target Start/End: Original strand, 26455459 - 26455488
Alignment:
Q  382 taaaataaaatgcatgaaatgatataaata 411  Q
    ||||||||||||||||||||||||||||||    
T  26455459 taaaataaaatgcatgaaatgatataaata 26455488  T

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Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 409 - 461
Target Start/End: Complemental strand, 27018889 - 27018837
Alignment:
Q  409 atactagattactaacccgtgcgccgcacgggatttatgagatgaaaaacatt 461  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27018889 atactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatt 27018837  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 411 - 461
Target Start/End: Complemental strand, 9062028 - 9061978
Alignment:
Q  411 actagattactaacccgtgcgccgcacgggatttatgagatgaaaaacatt 461  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9062028 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatt 9061978  T

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Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 409 - 461
Target Start/End: Original strand, 24773397 - 24773449
Alignment:
Q  409 atactagattactaacccgtgcgccgcacgggatttatgagatgaaaaacatt 461  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24773397 atactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatt 24773449  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 411 - 461
Target Start/End: Complemental strand, 35350233 - 35350183
Alignment:
Q  411 actagattactaacccgtgcgccgcacgggatttatgagatgaaaaacatt 461  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35350233 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatt 35350183  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 406 - 461
Target Start/End: Original strand, 2416271 - 2416326
Alignment:
Q  406 taaatactagattactaacccgtgcgccgcacgggatttatgagatgaaaaacatt 461  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2416271 taaaaactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatt 2416326  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 39879092 - 39879041
Alignment:
Q  410 tactagattactaacccgtgcgccgcacgggatttatgagatgaaaaacatt 461  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39879092 tactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatt 39879041  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 411 - 461
Target Start/End: Complemental strand, 39348803 - 39348753
Alignment:
Q  411 actagattactaacccgtgcgccgcacgggatttatgagatgaaaaacatt 461  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39348803 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatt 39348753  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 33826378 - 33826429
Alignment:
Q  410 tactagattactaacccgtgcgccgcacgggatttatgagatgaaaaacatt 461  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  33826378 tactagattactaacccatgcgccgcacgggttttatgagatgaaaaacatt 33826429  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 411 - 461
Target Start/End: Original strand, 27313617 - 27313667
Alignment:
Q  411 actagattactaacccgtgcgccgcacgggatttatgagatgaaaaacatt 461  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27313617 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatt 27313667  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 411 - 461
Target Start/End: Complemental strand, 38443923 - 38443873
Alignment:
Q  411 actagattactaacccgtgcgccgcacgggatttatgagatgaaaaacatt 461  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38443923 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatt 38443873  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 4014645 - 4014594
Alignment:
Q  410 tactagattactaacccgtgcgccgcacgggatttatgagatgaaaaacatt 461  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  4014645 tactagattactaacccgtgcgccgcacgggttttaagagatgaaaaacatt 4014594  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 461
Target Start/End: Complemental strand, 25882754 - 25882702
Alignment:
Q  409 atactagattactaacccgtgcgccgcacgggatttatgagatgaaaaacatt 461  Q
    |||||||||| ||||||||  ||||||||| | |||||||||||| |||||||    
T  25882754 atactagattgctaacccgcacgccgcacgagttttatgagatgacaaacatt 25882702  T

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Target: scaffold0531 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 411 - 457
Target Start/End: Original strand, 10948 - 10994
Alignment:
Q  411 actagattactaacccgtgcgccgcacgggatttatgagatgaaaaa 457  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  10948 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaa 10994  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 411 - 461
Target Start/End: Complemental strand, 16652891 - 16652841
Alignment:
Q  411 actagattactaacccgtgcgccgcacgggatttatgagatgaaaaacatt 461  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  16652891 actatattactaacccgtgcgccgcacgggttttatgagatgaaaaacatt 16652841  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 411 - 461
Target Start/End: Complemental strand, 19011786 - 19011736
Alignment:
Q  411 actagattactaacccgtgcgccgcacgggatttatgagatgaaaaacatt 461  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  19011786 actatattactaacccgtgcgccgcacgggttttatgagatgaaaaacatt 19011736  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 411 - 461
Target Start/End: Original strand, 7604743 - 7604793
Alignment:
Q  411 actagattactaacccgtgcgccgcacgggatttatgagatgaaaaacatt 461  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  7604743 actagattactaacccgtgcgccgcacgaattttatgagatgaaaaacatt 7604793  T

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