View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_low_19 (Length: 441)
Name: NF3184_low_19
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_low_19 |
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| [»] scaffold1194 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 377
Target Start/End: Complemental strand, 16530945 - 16530581
Alignment:
| Q |
20 |
tcattcaccttcaaaactttctcaaggacacttatattgtgttgtgtgccccatttattaatttactcaactcaactcaactcaaccactaatttcttat |
119 |
Q |
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| T |
16530945 |
tcattcaccttcaaaactttctcaaggacacttatattgtgttgtgtgccccatttattaatttactcaactcaactcaac-----cactaatttcttat |
16530851 |
T |
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| Q |
120 |
acnnnnnnnnnnnnnnnnnnncattgtctttaatataagatattgcttcatgttacatgtgaattgttaagtcatatagaaaaa---------------a |
204 |
Q |
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| T |
16530850 |
acaaaaaaggcaaaacaaaaacattgtctttaatataagatattgcttcatgttacatgtgaattgttaagtcatatagaagaagaaaaaaaaggaagaa |
16530751 |
T |
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| Q |
205 |
gtggaattctgttagaaacatggagaaagagcagccattgttggagaagaagcaatactatgaggattgtcctggttgtaaagtggaacaaactaaagag |
304 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16530750 |
gtgaaattctgttagaaacatggagaaagagc---cattgttggagaagaagcaatactatgaggattgtcctggttgtaaagtggaacaaactaaagag |
16530654 |
T |
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| Q |
305 |
cttaatcaagggttatccataataaatcttgtgattatttggatgattgttttatctgctagtaagaattatt |
377 |
Q |
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| T |
16530653 |
cttaatcaagggctatccatgataaatcttgtgattatttggatgattgttttatctgctagtaagcattatt |
16530581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 237 - 377
Target Start/End: Complemental strand, 16590696 - 16590556
Alignment:
| Q |
237 |
agccattgttggagaagaagcaatactatgaggattgtcctggttgtaaagtggaacaaactaaagagcttaatcaagggttatccataataaatcttgt |
336 |
Q |
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| T |
16590696 |
agccattgttggagaagaagcaatactatgaagattgtcctggttgcaaggttgaacaagaaaatgagcttaatgaaggagtatccataataaagctttt |
16590597 |
T |
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| Q |
337 |
gattatttggatgattgttttatctgctagtaagaattatt |
377 |
Q |
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| T |
16590596 |
gattatatggatggtggttttatcagcaagtaagcattatt |
16590556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 237 - 359
Target Start/End: Complemental strand, 16522474 - 16522352
Alignment:
| Q |
237 |
agccattgttggagaagaagcaatactatgaggattgtcctggttgtaaagtggaacaaactaaagagcttaatcaagggttatccataataaatcttgt |
336 |
Q |
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| T |
16522474 |
agccattgttggagaagaagcaatactataaggattgtcctggttgtaaggttgaacaagccaaagagcttaacaagggggtatccattacaaatctttt |
16522375 |
T |
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| Q |
337 |
gattatttggatgattgttttat |
359 |
Q |
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| T |
16522374 |
ggtcatatggatggttgtgttat |
16522352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1194 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold1194
Description:
Target: scaffold1194; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 203 - 370
Target Start/End: Complemental strand, 1470 - 1306
Alignment:
| Q |
203 |
aagtggaattctgttagaaacatggagaaagagcagccattgttggagaagaagcaatactatgaggattgtcctggttgtaaagtggaacaaactaaag |
302 |
Q |
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| T |
1470 |
aagtggaattctgttagaaacatggagaaagagc---cattgttggagaagaagcaatactatgaagattgtcctggttgtaaagtggaacaaactaaag |
1374 |
T |
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| Q |
303 |
agcttaatcaagggttatccataataaatcttgtgattatttggatgattgttttatctgctagtaag |
370 |
Q |
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| T |
1373 |
agcttaatcaagggctatccataataaatcttgtgattatttggatggttgtgttatctgctggtaag |
1306 |
T |
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