View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_low_2 (Length: 804)
Name: NF3184_low_2
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 678; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 678; E-Value: 0
Query Start/End: Original strand, 1 - 795
Target Start/End: Original strand, 2243112 - 2243893
Alignment:
| Q |
1 |
accacaataaagaacacattcaaaattgaaattaataagtatatctagtagtagtactttgtagaaccatgacattgatgtagaatattcaagtgcataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2243112 |
accacaataaagaacacattcaaaattgaaattaataagtatatctagtagtagtactttgtagaaccatgacattgatgtagaatattcaagtgcataa |
2243211 |
T |
|
| Q |
101 |
tgcttcaaaacaaaaggataaggaatattgtatactcacatatctctctgttctatttgtccaatgcacaaccaaattggtcatgtttcctataagatat |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2243212 |
tgcttcaaaa-aaaaggataaggaatattgtatactcacatagctctctgttctatttgtccaatgcacaaccaaattggtcatgtttcctataagatat |
2243310 |
T |
|
| Q |
201 |
gcatgaagtccaaaattgaatagcatataaaaaatgtcaaatatcatttcatctgtgtttacaggatgcaaatctccataaccaactgttgaaagtgtag |
300 |
Q |
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| T |
2243311 |
gcatgaagtccaaaattgaatagcatataaaaaatgtcaaatatcatttcatctgtgtttacaggatgcaaatctccataaccaactgttgaaagtgtac |
2243410 |
T |
|
| Q |
301 |
atatggaccaatatattgatgctacatatccatcccatagtgttaggtggtctgcatcatagacaagtgatagccatgaagctttcttatcgttgcgtac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2243411 |
atatggaccaatatattgatgctacatatccatcccatagtgttaggtggtctgcatcatagacaagtgatagccatgaagctttcttatcgttgcgtac |
2243510 |
T |
|
| Q |
401 |
tgtagccagaaaatagaaaaaacaggcagcacaatgcacctcaaatagtgatacctacaaaagacatcacattttaacttataattttagtgtttttata |
500 |
Q |
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| T |
2243511 |
tgtagccagaaaatagaaaaaacaggcagcacaatgcacctcaaatagtgatacctacaaaagacatcacattttaacttataattttagtgtttttata |
2243610 |
T |
|
| Q |
501 |
ccatactcctgttctcaactataagtgaaaaagtttatgtatttgatccaaattaaagaccaaataaaaactttttcgtttatatttgagaacataggta |
600 |
Q |
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| T |
2243611 |
ccatactccagttctcaactataagcgaaaaagtttatgtatttgatccaaatt------------aagactttttcgtttatatttgagaacataggta |
2243698 |
T |
|
| Q |
601 |
gtatattataagccataactttgcnnnnnnnnnnnnnnnntcactgtataattagaaagtacttacacataacagttttaaacagcgcaccaaaaagtag |
700 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2243699 |
gtatattataagccataactttgcaaaataaaaaacaaaatcactgtataattagaaagtacttacacataacagttttaaacagcgcaccaaaaagtag |
2243798 |
T |
|
| Q |
701 |
ttataattcctatccttttctaacctgacacacggaacaaagaaaggaaataagtaacaccaagtttaaacaaaaaggccactgtttagaataat |
795 |
Q |
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| T |
2243799 |
ttataattcctatccttttctaacctgacacacggaacaaagaaaggaaataagtaacaccaagtttaaacaaaaaggccactgtttagaataat |
2243893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 49699951 - 49699888
Alignment:
| Q |
231 |
aaaatgtcaaatatcatttcatctgtgtttacaggatgcaaatctccataaccaactgttgaaa |
294 |
Q |
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||||||||||||| ||| || ||| ||||||||||||| ||| ||||||||||||||||||| |
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| T |
49699951 |
aaaatgtcaaatagcatctcccttgtatttacaggatgcagatcaccataaccaactgttgaaa |
49699888 |
T |
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