View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3184_low_26 (Length: 401)
Name: NF3184_low_26
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 8 - 378
Target Start/End: Original strand, 863731 - 864103
Alignment:
| Q |
8 |
cagcagagaatggaacaaagaatgtgattatagcgtctgcggaagcaaaagtgcgacgtgttgtgttcacttcatcgattggaacggtctatatggacac |
107 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
863731 |
cagcagtgaatggaactaagaatgtgattatagcgtccgcggaagctaaagtgcgacgtgttgttttcacttcatcgattggaacggtctatatggaccc |
863830 |
T |
|
| Q |
108 |
aaatactagtagagatgttgtcgttgatgaatcatattggagtgatttagagcattgcaagaacaccaaggtttgattaattcactatgttcgtcttgtg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
863831 |
aaatactagtagagatgttgtcgttgatgaatcatattggagtgatttagagcattgcaagaacaccaaggtttgattaattcactctgttcgtcttgtg |
863930 |
T |
|
| Q |
208 |
cagagatctggttattaattaattaggtgatgaataatttaaattattttt--tgtgtgcagaactggtattgttatgggaagacagtggctgaacaatc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
863931 |
cagagatctggttattaattaattaggtgatgaataatttaactttttttttgtgtgtgcagaactggtattgttatgggaagacagtggctgaacaatc |
864030 |
T |
|
| Q |
306 |
agcatgggatatagcaaaagaaaatcaagttgatttggttgtggtgaacccagttgtggttcttggaccattg |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
864031 |
agcatgggatatagcaaaagaaaatcaagttgatttggttgtggtgaacccagttgtagttcttggaccattg |
864103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 186
Target Start/End: Original strand, 854092 - 854182
Alignment:
| Q |
95 |
tctatatggacacaaatactagtagagatgttgtcgttgatgaatcatattggagtgatttagagcattgcaagaacaccaaggtttgatta |
186 |
Q |
| |
|
||||| ||||| ||||||| ||||| | |||||| ||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
854092 |
tctatttggacccaaatacaagtagggttgttgtggtt-atgattcatattggagtgatttagaatattgcaagaacaccaaggtttgatta |
854182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 382
Target Start/End: Original strand, 45243172 - 45243288
Alignment:
| Q |
266 |
agaactggtattgttatgggaagacagtggctgaacaatcagcatgggatatagcaaaagaaaatcaagttgatttggttgtggtgaacccagttgtggt |
365 |
Q |
| |
|
|||| |||||||| |||||||| ||||||| ||| | ||||||||||| |||||||||| || || ||||||||||| ||||| |||||| |||| |
|
|
| T |
45243172 |
agaattggtattgctatgggaaagcagtggcagaagcagcagcatgggatgtagcaaaagagaaaggtgtggatttggttgtagtgaatccagttttggt |
45243271 |
T |
|
| Q |
366 |
tcttggaccattgctac |
382 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
45243272 |
tcttggaccattgctac |
45243288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 45242920 - 45243091
Alignment:
| Q |
8 |
cagcagagaatggaacaaagaatgtgattatagcgtctgcggaagcaaaagtgcgacgtgttgtgttcacttcatcgattggaacggtctatatggacac |
107 |
Q |
| |
|
|||||| ||||||| ||||||||||||| ||||| ||| |||||||||||| | || || || ||||| ||||| ||||| | |||||||||||| | |
|
|
| T |
45242920 |
cagcagtgaatggagcaaagaatgtgatcatagctggtgcagaagcaaaagtgaggcgcgtggttttcacatcatcaattggtgcagtctatatggaccc |
45243019 |
T |
|
| Q |
108 |
aaatactagtagagatgttgtcgttgatgaatcatattggagtgatttagagcattgcaagaacaccaaggt |
179 |
Q |
| |
|
|||| ||| ||||| | |||||||| || | ||||||||||| ||| ||||||||| |||||||| |
|
|
| T |
45243020 |
caataggagtgttgatgtagaggttgatgagtcttgctggagtgatttggagttttgcaagaaaaccaaggt |
45243091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University