View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_low_3 (Length: 728)
Name: NF3184_low_3
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 320 - 703
Target Start/End: Complemental strand, 36092339 - 36091956
Alignment:
| Q |
320 |
gaactcggtctctggtatatgacatgtgccgaaagttcaagctttccatcaattgttttagcatttggttgttttgctcaacagctctatttgtattaac |
419 |
Q |
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| T |
36092339 |
gaactcggtctctggtatatgacatgtgccgaaagttcaagctttccatcaattgttttagcatttggttgttttgctcaacagctctatttgtattaac |
36092240 |
T |
|
| Q |
420 |
caattccttacgaagttgatttctttcctttctcatttcctcaaattcatgtctttgttgatctctttcatttctcatttcttcaagttcatgtctttgt |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36092239 |
caattccttacgaagttgatttctttcctttctcatttcctcaaattcatgtctttgttgatctctttcatttctcatttcttcaagttcatgtctttgt |
36092140 |
T |
|
| Q |
520 |
acccactcagttgatgaagaacatgagccacgataatttgacctccccttccctactaatacattagattccattccaagaccatacactcgacctttgt |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36092139 |
acccactcagttgatgaagaacatgagccacgataatttggcctccccttccctactaatacagtagattccattccaagaccatacactcgacctttgt |
36092040 |
T |
|
| Q |
620 |
ctattcctgcaacctcacaccaaacatctaattcttttggtgggggagttccttgcaaagatgatgcttgggtcaattcttcca |
703 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36092039 |
ttattcctgcaacctcacaccacacatctaattcttttggtgggggagttccctgcaaagatgatgcttgggtcaattcttcca |
36091956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 36092654 - 36092483
Alignment:
| Q |
1 |
tgatctgaacctacatcacaggtattagtcttgtttaccgctgggctgctatgcataattaataaatatttgtacaacatagattatataat-------- |
92 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36092654 |
tgatctgaacctacatcacaggtattagtcttgtttaccgctgggctgctatgcataattaataaatatttgtacaacatagattatataatataattat |
36092555 |
T |
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| Q |
93 |
ataacaactactagaaaaaaggcttatagagacagtcaattaaacatttaatattaagtgcttgaaagtact |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36092554 |
ataacaactactagaaaaaaggcttatagagacagtcaattaaacatttaatattaagtgcttgaaagtact |
36092483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 36092471 - 36092404
Alignment:
| Q |
188 |
acatcatatgttttagtcctaacaagatgcaacataannnnnnncattcagattcactatctaattcc |
255 |
Q |
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|||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
36092471 |
acatcatatgttttggtcctaacaagatgcaacataatttttttctttcagattcactatctaattcc |
36092404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 476 - 559
Target Start/End: Complemental strand, 34565706 - 34565623
Alignment:
| Q |
476 |
gttgatctctttcatttctcatttcttcaagttcatgtctttgtacccactcagttgatgaagaacatgagccacgataatttg |
559 |
Q |
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|||||||||||||||||||||||| |||||| || || ||||| |||||||| | ||| ||||||| |||||| ||||||||| |
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| T |
34565706 |
gttgatctctttcatttctcatttgttcaagctcgtgcctttgcacccactcggatgaagaagaaccagagccatgataatttg |
34565623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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