View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_low_32 (Length: 356)
Name: NF3184_low_32
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 5 - 336
Target Start/End: Complemental strand, 50400068 - 50399732
Alignment:
| Q |
5 |
cagatagaattagacaacacatcttaacccaaaatcttaagacattgagtatatcggtatacgagttatctcatgtatatcctactcaacatccattttt |
104 |
Q |
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| T |
50400068 |
cagatagaattagacaacacatcttaacccaaaatcttaagacattgagtatatcggtatacgagttatctcatgtatatcctactcaacatccattttt |
50399969 |
T |
|
| Q |
105 |
ccatccaat-----gtaagactcttactcacacttgacataccgacaatttgatattatgtactagaatacgtaagtatttgtgagactgtttaggaggt |
199 |
Q |
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| T |
50399968 |
ccatccaatccaatgtaagactcttactcacacttgacataccgacaatttgatattatgtactagaatacgtaagtatctgtgagactgtttaggaggt |
50399869 |
T |
|
| Q |
200 |
tacggcatatccataagatgttgttagtttattttcatttgctctctagaatagtagcttactaaaactgcttgtaacttaatgaaaacaatttgacttt |
299 |
Q |
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| T |
50399868 |
tacgacatatccataagatgttgttagtttatttccatttgctctctagaatagtagcttactaaaactgcttgtaacttaatgaaaacaatttgacttt |
50399769 |
T |
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| Q |
300 |
ctttttgggttcgagccccgctagtgctcttagagga |
336 |
Q |
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| T |
50399768 |
cttttcgggttcgagccccgctagtgctcttggagga |
50399732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 48816649 - 48816609
Alignment:
| Q |
90 |
tcaacatccatttttccatccaatgtaagactcttactcac |
130 |
Q |
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| T |
48816649 |
tcaacatccatttttccatccaatgtgagactcttactcac |
48816609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 42637168 - 42637110
Alignment:
| Q |
92 |
aacatccatttttccatccaatgtaagactcttactcacacttgacataccgacaattt |
150 |
Q |
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| T |
42637168 |
aacattcactttttcatccaatacaagactcttactcacacttgaaataccgacaattt |
42637110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 32760100 - 32760158
Alignment:
| Q |
90 |
tcaacatccatttttccatccaatgtaagactcttactcacacttgacataccgacaat |
148 |
Q |
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| T |
32760100 |
tcaatatcaatttttccatctaatatgtgactcttactcacacttgacataccaacaat |
32760158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 33836006 - 33836063
Alignment:
| Q |
90 |
tcaacatccatttttccatccaatgtaagactcttactcacacttgacataccgacaa |
147 |
Q |
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| T |
33836006 |
tcaacttccatttttccatccaatgtgaaactcttattcgcacttgatataccaacaa |
33836063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 45679544 - 45679588
Alignment:
| Q |
91 |
caacatccatttttccatccaatgtaagactcttactcacacttga |
136 |
Q |
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| T |
45679544 |
caacatccattttttcatccaatgt-agacttttactcacacttga |
45679588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 39693967 - 39693930
Alignment:
| Q |
17 |
gacaacacatcttaacccaaaatcttaagacattgagt |
54 |
Q |
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| T |
39693967 |
gacaccacatcttaacccaaaatcttaaggcattgagt |
39693930 |
T |
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