View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_low_37 (Length: 338)
Name: NF3184_low_37
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 328
Target Start/End: Complemental strand, 48533372 - 48533050
Alignment:
| Q |
17 |
accttccgcatccgcaagttattggggtctcttacatctctatgtggcttatgcttattattcattgtggtatcttacatcatcaactccgcagca---- |
112 |
Q |
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| T |
48533372 |
accttccgcatccgcaagttattggggtctcttacatctctatgtggcttatgcttattattcattgtggtatcttac---atcaactccgcagcaccag |
48533276 |
T |
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| Q |
113 |
ccagcctagcctagttctgttgttgttctttaggctgtttctaaaagcattctagtatagtatatg-ttttgttattgttggtttagttcatgg------ |
205 |
Q |
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| T |
48533275 |
ccagcctagcctagttctgttgttgttctttaggctgtttctaaaagcattctagtatagtatatgtttttgttattgttggtttggttcatggaacaaa |
48533176 |
T |
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| Q |
206 |
---aacaaacttaattcatttctatttgatatttttctcaattcatttctattggagaaatccatcttatgtattaaatgcaattcacggggctttggca |
302 |
Q |
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| T |
48533175 |
caaaacaaacttaattcatttctatttgatatttttctcaattcatttctattggagaaatccatcttatatattaaatgcaattcacggggctttggca |
48533076 |
T |
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| Q |
303 |
tcaactcaatcaaacttttgtctctg |
328 |
Q |
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| T |
48533075 |
tcaactcaatcaaacttttgtttctg |
48533050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 48536281 - 48536225
Alignment:
| Q |
41 |
gggtctcttacatctctatgtggcttatgcttattattcattgtggtatcttacatc |
97 |
Q |
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| T |
48536281 |
gggtatcttacatctctatgtggcttatgtttattattcactgtggtaacttacatc |
48536225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 48536193 - 48536082
Alignment:
| Q |
108 |
cagcaccagcctagcctagttctgttgtt-----gttcttt-----aggctgtttctaaaagcattctagtatagtatatgttttgttattgttggttta |
197 |
Q |
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| T |
48536193 |
cagcaccagcctagcctagttctgttgttacgttgttctttggtttaggctgtttataaaagcattccagtatag--tatgtcttgttattgttgg-ttg |
48536097 |
T |
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| Q |
198 |
gttcatggaacaaac |
212 |
Q |
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| T |
48536096 |
gttcatggaacaaac |
48536082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 48535940 - 48535899
Alignment:
| Q |
278 |
aaatgcaattcacggggctttggcatcaactcaatcaaactt |
319 |
Q |
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| T |
48535940 |
aaatgcaattcacggggcttgggcatcgactcaataaaactt |
48535899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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