View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_low_38 (Length: 334)
Name: NF3184_low_38
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_low_38 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 334
Target Start/End: Complemental strand, 27645853 - 27645532
Alignment:
| Q |
14 |
atttaaaaggaatcttagtaactagttattaaattaatttttaatttctcatccgtttgagtttgaactaggatctccattttcttttccgttctcttga |
113 |
Q |
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|||| |||||||| ||||||| || |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27645853 |
atttgaaaggaatgttagtaattacttatcaaattaatttttaatttctcattcgtttgagtttgaactaggatctccattttcttttccgttatcttga |
27645754 |
T |
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| Q |
114 |
gccagttttaccgtaaaaatatagaagtcgcaaattgtggcatcaggttgaatgcatgcgttgagtgagcttgcattgctgaagcaaatagagtcttgat |
213 |
Q |
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| T |
27645753 |
gccagttttaccgtgaaaatatagaagtcgcaaattgtggcatcaggttgaatgcgtgcgttgagtgagcttgcattgctgaagcaaatagagtcttaat |
27645654 |
T |
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| Q |
214 |
ctatttattttggttgagtttattaaccatttgcatnnnnnnntggaccttgtgaatacgcacaa-ttnnnnnnntaaaatcttttcctcctttgaacaa |
312 |
Q |
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||||||||||||||||||||||||||||||| || | |||||||||||||||||||||| || | |||||||||||||||||||| |
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| T |
27645653 |
ctatttattttggttgagtttattaaccattcgcttaaaaaaatggaccttgtgaatacgcacaatttaatatttttttttcttttcctcctttgaacaa |
27645554 |
T |
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| Q |
313 |
aatcatacaaaaggtattcgaa |
334 |
Q |
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| T |
27645553 |
aatcatacaaaaggtattcgaa |
27645532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 27555598 - 27555501
Alignment:
| Q |
23 |
gaatcttagtaactagttattaaattaatttttaatttctcatccgtttgagtttgaactaggatctccattttcttttccgttctcttgagccagtt |
120 |
Q |
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| T |
27555598 |
gaatgttagtaactggttattaaattaatttttaatttttcattcgtctgagtttgaactagaatctccaatttcttttccgttagctcgagccagtt |
27555501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 27554425 - 27554463
Alignment:
| Q |
293 |
tcttttcctcctttgaacaaaatcatacaaaaggtattc |
331 |
Q |
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| T |
27554425 |
tcttttcctcctttgaacaaaatcatacaaaaggtattc |
27554463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 27554581 - 27554622
Alignment:
| Q |
293 |
tcttttcctcctttgaacaaaatcatacaaaaggtattcgaa |
334 |
Q |
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| T |
27554581 |
tcttttcctcctttaaacaaaatcatacaaaaggtattcgaa |
27554622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 332
Target Start/End: Original strand, 27554733 - 27554772
Alignment:
| Q |
293 |
tcttttcctcctttgaacaaaatcatacaaaaggtattcg |
332 |
Q |
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| T |
27554733 |
tcttttcctcctttgaacaaaatcatacaaaaagtattcg |
27554772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 331
Target Start/End: Complemental strand, 27645390 - 27645352
Alignment:
| Q |
293 |
tcttttcctcctttgaacaaaatcatacaaaaggtattc |
331 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |
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| T |
27645390 |
tcttttcctcctttgaacaaaatcatacgaaaggtattc |
27645352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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