View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_low_40 (Length: 329)
Name: NF3184_low_40
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 311
Target Start/End: Original strand, 39530827 - 39531127
Alignment:
| Q |
13 |
gagagtaatttgaagacagaacaattaatactnnnnnnntcttataaaaatataaacagaaatctcaaaatagtcttgtagaaatgaggaatagagtact |
112 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39530827 |
gagagtaatttgaagacagaacaattaatactaaaaaaatcttataaaaatataaacagaaatctcaaaatagtcttgtagaaatgaggaatagagtact |
39530926 |
T |
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| Q |
113 |
actctccatcctnnnnnnnnn--catgaattggtaactaactaaaatataaccttaatcatatcatataataggaatggctgaatttacacaaagcatca |
210 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39530927 |
actctccatcctaataaaaaaaacatgaattggtaactaactaaaatataaccttaatcatatcatataataggaatggctgaatttacacaaagcatca |
39531026 |
T |
|
| Q |
211 |
acaactatagtgatttgaattggtccctttttcagtcaagagcatggtcctggtctacgatcttcaatgtaatcaattttgagcgacgtttacgcgcttt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39531027 |
acaactatagtgatttgaattggtccctttttcagtcaagagcatggtcctggtctacgatcttcaatgtaatcaattttgagcgacgtttacgcgcttt |
39531126 |
T |
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| Q |
311 |
g |
311 |
Q |
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| T |
39531127 |
g |
39531127 |
T |
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