View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_low_42 (Length: 321)
Name: NF3184_low_42
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 40551772 - 40552068
Alignment:
| Q |
19 |
aagctatccatatttagtgatttgtatgcctgctaataaatagaatacataaacaaagacatgaatgcgaaataaccatgcataagagtacagatttaag |
118 |
Q |
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| T |
40551772 |
aagctatccatatttagtgatttgtatgcctgctaataaatagaatacataaacaaagatatgaatgcgaaataaccatgcataagagtacagatttaag |
40551871 |
T |
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| Q |
119 |
tatgtaaatttgtcgccctatcccaatgttagagtaatctaaacaactgaaaacaataataccactgaactactgaaacaatccgtatatgattaatttt |
218 |
Q |
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| T |
40551872 |
tatgtaaatttgtcgccctatcccaatgttagagtgatctaaacaactgaaaacaataataccacagaactactgaaacaatccgtatatgattaatttt |
40551971 |
T |
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| Q |
219 |
tcaaaaactgcacacgtataatttagtttaaaaattgccctaggaaaagataaataggcgcaaggcaagaactctcctcaaaaccttagaattatct |
315 |
Q |
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| T |
40551972 |
tcaaaaactgcacacgtataatttagtttaaaaattgccctaggaaaagataaataagcgcaaggcaagaactctcctcaaaaccttagaagtatct |
40552068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 40569110 - 40569173
Alignment:
| Q |
186 |
aactactgaaacaatccgtatatgattaatttttcaaaaactgcacacgtataatttagtttaaaa |
251 |
Q |
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| T |
40569110 |
aactactgaaacagtcggtatatgactaatttttcaaaaactgcata--tataatttagtttaaaa |
40569173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 15110344 - 15110539
Alignment:
| Q |
19 |
aagctatccatatttagtgatttgtatgcctgctaataaatagaatacataaacaaagacatgaatgcgaaataaccatgcataagagtacagatttaag |
118 |
Q |
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|||| ||||||||||||||||||||||| |||||| | |||||||||||||||| | || |||||| |||||| || ||||||||||||| || |||| |
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| T |
15110344 |
aagccatccatatttagtgatttgtatggctgctattgaatagaatacataaacgacgagatgaatatgaaatattcacgcataagagtacaaatgtaag |
15110443 |
T |
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| Q |
119 |
tatgtaaatttgtcgccctatcccaatgttagagtaatctaaacaactgaaaacaataataccactgaactactgaaacaatccgtatatgattaa |
214 |
Q |
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| T |
15110444 |
tacgtaaatttgtcaccctatcccaattttagagtaatccgaacaaccaaaaacaataataccacaaaactattaaaacaatccgtatataattaa |
15110539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 15110018 - 15109895
Alignment:
| Q |
57 |
aatagaatacataaacaaagacatgaatgcgaaataaccatgcataagagtacagatttaagtatgtaaatttgtcgccctatcccaatgttagagtaat |
156 |
Q |
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|||||||||||||||| |||| ||||||| |||||| ||| | | |||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
15110018 |
aatagaatacataaacgaagagatgaatgtgaaatatccactcgttagagtacaaatttaagtacgtaaatttgtcaccctatcccaatgttagagtaat |
15109919 |
T |
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| Q |
157 |
ctaaacaactgaaaacaataatac |
180 |
Q |
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| T |
15109918 |
ccaaacaaccaaaaacaagaatac |
15109895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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