View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3184_low_45 (Length: 311)

Name: NF3184_low_45
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3184_low_45
NF3184_low_45
[»] chr2 (3 HSPs)
chr2 (21-301)||(27645993-27646273)
chr2 (153-301)||(27555876-27556026)
chr2 (208-275)||(12226045-12226113)
[»] chr4 (2 HSPs)
chr4 (218-299)||(17461519-17461600)
chr4 (218-289)||(13923024-13923095)
[»] chr6 (2 HSPs)
chr6 (220-294)||(15654427-15654502)
chr6 (218-289)||(15883280-15883351)
[»] chr8 (2 HSPs)
chr8 (225-289)||(4930509-4930573)
chr8 (164-206)||(8351472-8351514)
[»] chr5 (1 HSPs)
chr5 (218-271)||(36648284-36648337)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 21 - 301
Target Start/End: Original strand, 27645993 - 27646273
Alignment:
Q  21 aaggatgggaaaaagtcatgttgtctactcttcaagtgagaaatattttgaacactatttttaatattcactcttttatcatgtgaaactccttgggtag 120  Q
    ||||||||||||||||||||| ||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||| |||||||||| ||||||||    
T  27645993 aaggatgggaaaaagtcatgtcgtctacttttcaagtgagaaatgttatgaacactatttttaatgttcactcttttatcttgtgaaactcgttgggtag 27646092  T
Q  121 attatggagttgannnnnnnnnnnnnnnnnnatataattactaattgttaatgctactttttcaaggttccatttgaaagcatgtgaattcaattccaaa 220  Q
    |||||||||||||                  |||||||||||||||||||||| || |||||||||||||||||||| | ||||||||||||||||||||    
T  27646093 attatggagttgattttctttttttatttttatataattactaattgttaatgttaatttttcaaggttccatttgagaacatgtgaattcaattccaaa 27646192  T
Q  221 attgattcaatttctcatattcatccactatatattttatatctccatgtatgttatccaaatacgcaaatttaccctatg 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  27646193 attgattcaatttctcatattcatccactatatattttatatctccatgtatgttatccaaatatgcaaattcaccctatg 27646273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 153 - 301
Target Start/End: Original strand, 27555876 - 27556026
Alignment:
Q  153 tataattactaattgtta-atgctactttttcaaggttccatttgaaagcatgtgaattcaattccaaaattgattcaatttctcatattcatccactat 251  Q
    ||||| ||||||||| || || ||| ||||| |||||| ||||||| || || |||||||||||| |||||||||| ||||| ||||||  |||||||||    
T  27555876 tataaatactaattgctatatactaattttttaaggtttcatttgagagtatttgaattcaattcaaaaattgatttaatttttcatatcaatccactat 27555975  T
Q  252 ata-ttttatatctccatgtatgttatccaaatacgcaaatttaccctatg 301  Q
    ||| |||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  27555976 atatttttttatctccatgtatgttatccaaataagcaaattcaccctatg 27556026  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 12226045 - 12226113
Alignment:
Q  208 attcaattccaaaattga-ttcaatttctcatattcatccactatatattttatatctccatgtatgtt 275  Q
    |||||||||||||| | | |||||||| |  |||| |||||||||||||||||||||| |||| |||||    
T  12226045 attcaattccaaaaattagttcaatttatggtattaatccactatatattttatatcttcatgcatgtt 12226113  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 218 - 299
Target Start/End: Complemental strand, 17461600 - 17461519
Alignment:
Q  218 aaaattgattcaatttctcatattcatccactatatattttatatctccatgtatgttatccaaatacgcaaatttacccta 299  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||| |||||||||| | ||||||| ||| |||| ||||    
T  17461600 aaaattgattcaatttctcatattaatctactatatattgtatatcttcatgtatgttgttcaaatacacaagtttatccta 17461519  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 13923095 - 13923024
Alignment:
Q  218 aaaattgattcaatttctcatattcatccactatatattttatatctccatgtatgttatccaaatacgcaa 289  Q
    |||||| ||||||||||||||||  ||||| |||||||| || ||||||||||||||| |||||||||||||    
T  13923095 aaaatttattcaatttctcatataaatccattatatattgtacatctccatgtatgttttccaaatacgcaa 13923024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 15654427 - 15654502
Alignment:
Q  220 aattgattcaatttctcatattcatccactatatattt-tatatctccatgtatgttatccaaatacgcaaattta 294  Q
    |||||||||||||||||||||  ||||||||||||||| |||||||| ||||||||| | ||||||||||| ||||    
T  15654427 aattgattcaatttctcatatcaatccactatatatttgtatatctcaatgtatgttgttcaaatacgcaagttta 15654502  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 15883351 - 15883280
Alignment:
Q  218 aaaattgattcaatttctcatattcatccactatatattttatatctccatgtatgttatccaaatacgcaa 289  Q
    |||||| ||||||||||||||||  || || |||||||| || |||||| |||||||| |||||||||||||    
T  15883351 aaaatttattcaatttctcatataaattcattatatattgtacatctccgtgtatgttgtccaaatacgcaa 15883280  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 4930509 - 4930573
Alignment:
Q  225 attcaatttctcatattcatccactatatattttatatctccatgtatgttatccaaatacgcaa 289  Q
    ||||||||||||||||  ||||| |||||||| || ||||||||||||||| |||||||||||||    
T  4930509 attcaatttctcatataaatccattatatattgtacatctccatgtatgttttccaaatacgcaa 4930573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 8351472 - 8351514
Alignment:
Q  164 attgttaatgctactttttcaaggttccatttgaaagcatgtg 206  Q
    ||||||||||||||||| ||||||||||||| || ||||||||    
T  8351472 attgttaatgctactttctcaaggttccattggagagcatgtg 8351514  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 36648284 - 36648337
Alignment:
Q  218 aaaattgattcaatttctcatattcatccactatatattttatatctccatgta 271  Q
    |||||||||||||||||||||||   |||||| |||||||||||| | ||||||    
T  36648284 aaaattgattcaatttctcatataagtccactgtatattttatattttcatgta 36648337  T

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