View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_low_46 (Length: 310)
Name: NF3184_low_46
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 35430301 - 35430568
Alignment:
| Q |
20 |
acatagtttttcctgttagtaatcttaataatgatgtttggtagtttggaggggaggggaagggaggcaacatagtcacattggtttccccattagtaat |
119 |
Q |
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| T |
35430301 |
acatagtttttcccattagtaatcttaataatgatgtttggtagtttggaggggaggggaagggaggcaacatagtcacattggttt-ccctttagtaat |
35430399 |
T |
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| Q |
120 |
cttcctaatgatgaaatataagagaaaatagagaaatctttcnnnnnnntttaaagagtatattttccctcccctccaaactcctaaacaaaacctaagt |
219 |
Q |
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| T |
35430400 |
cttcctaacgatgaaatataagagaaaattgagaaatcttttaaaaaaaattaaagagtatattttccctcccctctaaactcctaaacaaaacctaagt |
35430499 |
T |
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| Q |
220 |
tcactccgttttacatcattatgttcatttatatctatgtacattcaggttcgctaatgatccattccctctctgtgct |
298 |
Q |
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| T |
35430500 |
tcactccg----------ttatgttcatttatatttctgtacattcaggttcgctaatgatccattccctctctgtgct |
35430568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 26571357 - 26571391
Alignment:
| Q |
186 |
ccctcccctccaaactcctaaacaaaacctaagtt |
220 |
Q |
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| T |
26571357 |
ccctcccctccaaactcccaaacaaaacctaagtt |
26571391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 220
Target Start/End: Original strand, 8828770 - 8828798
Alignment:
| Q |
192 |
cctccaaactcctaaacaaaacctaagtt |
220 |
Q |
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| T |
8828770 |
cctccaaactcctaaacaaaacctaagtt |
8828798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 16625638 - 16625670
Alignment:
| Q |
54 |
tgtttggtagtttggaggggaggggaagggagg |
86 |
Q |
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| T |
16625638 |
tgtttgggagtttggaggggaggggaagggagg |
16625670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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