View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_low_51 (Length: 286)
Name: NF3184_low_51
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 24225284 - 24225033
Alignment:
| Q |
19 |
tgcatcctcaaacaaataaaccaagaacaagagcgatccaaagacaaaaactcaaacgaaaagaacacccatacacatcccaaaacatgacaaaactata |
118 |
Q |
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| T |
24225284 |
tgcatcctcaaacaaataaaccaagaacaagagcgatccaaagacaaaaactcaaacaaaaagaacacccatacacatcccaaaacatgacaaaactata |
24225185 |
T |
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| Q |
119 |
catatcaaccaacaaccggagcaaaccgaacaaacattaaccaatgacgacaagcatcaaag-----aaacaagtaaataccacggtgaaagaataactt |
213 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
24225184 |
catatcaaccaacaaccggagcagaccgaacaaacattaaccaatgacgacaagcatcaaagaaattaaacaagtaaataccatggtgaaagaataactt |
24225085 |
T |
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| Q |
214 |
ctacgtctctaaaatccaaaatattgatgattgatgcaattaatttcaaaac |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24225084 |
ctacgtctctaaaatccaaaatattgatgattgatgcaattaatttcaaaac |
24225033 |
T |
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