View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_low_53 (Length: 277)
Name: NF3184_low_53
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 37244807 - 37244557
Alignment:
| Q |
10 |
caatgagattaaggaaaatgtattttgtgctgtcatctaatttcacagcagggagcctaagaacacctcgattgaaggaaacgtctttgaggctccttga |
109 |
Q |
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| T |
37244807 |
caatgagattaaggaaaatgtattttgtgctgtcatctaatttcacggcagggagcctaagaacacctcgattgaaggaaacgtctttgaggctccttga |
37244708 |
T |
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| Q |
110 |
attgcttttcttgaagcgtactccagcctcttggagctctcttgcagatcgaataatataatcttcgtctggttcctcacaatttaacaaatttcttatt |
209 |
Q |
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| T |
37244707 |
atcgcttttcttgaagcgtactccagcctcttggagctctcttgcagatcgaataatataatcttcgtctggttcctcacaatttaacaaatttctcatt |
37244608 |
T |
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| Q |
210 |
ggtggtctgagcgagggtgttgtgtggcttgcgttttcttgtatcatactt |
260 |
Q |
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| T |
37244607 |
ggtggtctgagcgagggtgttgtgtggcttgcgttttcttgtatcatactt |
37244557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 37283216 - 37283101
Alignment:
| Q |
60 |
gggagcctaagaacacctcgattgaaggaaacgtctttgaggctccttgaattgcttttcttgaagcgtactccagcctcttggagctctcttgcagatc |
159 |
Q |
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| T |
37283216 |
gggagcctaagaacacctcgattgaaggaaacatctttgaggctccttgttttgcttttcttgaagctgattccagcctctttcagctccattgcagatc |
37283117 |
T |
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| Q |
160 |
gaataatataatcttc |
175 |
Q |
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| T |
37283116 |
gattaagatgatcttc |
37283101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 37305474 - 37305355
Alignment:
| Q |
60 |
gggagcctaagaacacctcgattgaaggaaacgtctttgaggctccttgaattgcttttcttgaagcgtactccagcctcttggagctctcttgcagatc |
159 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||| || ||| ||||||||| |||||| | |||||| || ||||||||| ||||||||| |
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| T |
37305474 |
gggagcctaagaacacctcgattgaaggaaacatctttaaggttctttgttttgcttttcatgaagctgattccagcttcatggagctctattgcagatc |
37305375 |
T |
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| Q |
160 |
gaataatataatcttcgtct |
179 |
Q |
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||| |||| |||||||||| |
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| T |
37305374 |
aaatgatatgatcttcgtct |
37305355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 166
Target Start/End: Complemental strand, 37318750 - 37318644
Alignment:
| Q |
60 |
gggagcctaagaacacctcgattgaaggaaacgtctttgaggctccttgaattgcttttcttgaagcgtactccagcctcttggagctctcttgcagatc |
159 |
Q |
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|||||||||||||||||||||| ||| ||||| ||||| ||||||| | |||||| ||||||| || | ||||||||| || |||||| |||||||| |
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| T |
37318750 |
gggagcctaagaacacctcgatcgaatgaaacatcttttaggctccacgttttgcttatcttgaatcggattccagcctcgtgaagctctactgcagatc |
37318651 |
T |
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| Q |
160 |
gaataat |
166 |
Q |
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||||||| |
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| T |
37318650 |
gaataat |
37318644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 179
Target Start/End: Complemental strand, 37965417 - 37965303
Alignment:
| Q |
65 |
cctaagaacacctcgattgaaggaaacgtctttgaggctccttgaattgcttttcttgaagcgtactccagcctcttggagctctcttgcagatcgaata |
164 |
Q |
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||||||||||||||||| |||||||| |||||||| ||| ||| |||||||||||||||| | |||| | |||||||| || ||||||||||||| |
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| T |
37965417 |
cctaagaacacctcgatcgaaggaaaaatctttgagactctttgttttgcttttcttgaagctgattccaacttcttggagtgctattgcagatcgaatg |
37965318 |
T |
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| Q |
165 |
atataatcttcgtct |
179 |
Q |
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| T |
37965317 |
aaatactcttcgtct |
37965303 |
T |
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