View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_low_56 (Length: 270)
Name: NF3184_low_56
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 6250885 - 6250655
Alignment:
| Q |
1 |
agttaataagggggagaaaaagtaatggaccttataacacaattcactgtttccatcgaaagaatccaaataacctgaaacacaaatcaaatcatttggt |
100 |
Q |
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| T |
6250885 |
agttaataagggggagaaaaagtaatggaccttataacccaagtcactgtttccatcgaaagaatccaaataacctgaaacacaaatcaaatcatttggt |
6250786 |
T |
|
| Q |
101 |
ttcaagtgttcataagcaatttcagccacattgttccacatcataagaagcaccctgttagcaaaacgcagaacaaaatgtccgttttgaatacacaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
6250785 |
ttcaagtgttcataagcaatttcagccacattgttccacatcataagaagcaccctgttaacaaaacgcagaacaaaatgtccgttttgaatacacagac |
6250686 |
T |
|
| Q |
201 |
accaaatcaaaacgaacaataattcattttc |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
6250685 |
accaaatcaaaacgaacaataattcattttc |
6250655 |
T |
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