View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_low_59 (Length: 258)
Name: NF3184_low_59
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_low_59 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 7534065 - 7534290
Alignment:
| Q |
15 |
agatggatagtacctaaattaatgttcaccaataatcatggcaggagcacaacccattattcatatggtggaaccttttagcatctcggatgatgaattc |
114 |
Q |
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| T |
7534065 |
agatggatagtacctaaattaatgttcaccaataaccatggcaggagcacaacccattattcatatggtggaaccttttagcatctcggatgatgaattc |
7534164 |
T |
|
| Q |
115 |
tcttcccacaagcttagaaataaacttcactgcagtgtgacaatcaccacaaaaacggcgattctgaattactttaatagtagaacgaaccttactgtta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7534165 |
tcttcccacaagcttagaaataaacttcactgcagtgtgacaatcaccacaaaaacggcgattctgaattactttaatagtagaacgaaccttactgtta |
7534264 |
T |
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| Q |
215 |
aagagaccttgagcaacagccagtct |
240 |
Q |
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|||||||||||||||||||||||||| |
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| T |
7534265 |
aagagaccttgagcaacagccagtct |
7534290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 240
Target Start/End: Original strand, 7448549 - 7448741
Alignment:
| Q |
45 |
aataatcatggcaggagcacaacccattattcatatggtggaaccttttagcatctcggatgatgaattctcttcccacaagcttagaaataaacttcac |
144 |
Q |
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| T |
7448549 |
aataatccttgcaagagcatagcccatttttaaaatggtggcaccttttagctt---ggatgatgagttctcttcccacgatcttagaaataatcttcag |
7448645 |
T |
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| Q |
145 |
tgcagtgtgacaatcaccacaaaaacggcgattctgaattactttaatagtagaacgaaccttactgttaaagagaccttgagcaacagccagtct |
240 |
Q |
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| T |
7448646 |
tgcagtatgacaatcaggacaaatacgaaaattcttaattactctaatagttgaacgagcaggactgctaaagagacctttagcaacagcaagtct |
7448741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 18663501 - 18663723
Alignment:
| Q |
18 |
tggatagtacctaaattaatgttcaccaataatcatggcaggagcacaacccattattcatatggtggaaccttttagcatctcggatgatgaattctct |
117 |
Q |
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|||| |||||||| ||||||||||||||||||| ||||||||| | |||||| || | ||| ||||||||||||||||||||||||||||||||||| |
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| T |
18663501 |
tggacagtacctaggttaatgttcaccaataatccctgcaggagcatagcccatttttaaaatgatggaaccttttagcatctcggatgatgaattctct |
18663600 |
T |
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| Q |
118 |
tcccacaagcttagaaataaacttcactgcagtgtgacaatcaccacaaaaacggcgattctgaattactttaatagtagaacgaaccttactgttaaag |
217 |
Q |
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||||||||| | |||||||| ||||| |||||| |||||||||||||||| |||| |||||| ||||||| | || ||| |||| || |||||||| | |
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| T |
18663601 |
tcccacaagatcagaaataatcttcaatgcagtatgacaatcaccacaaacacggagattcttaattactctgatggtactacgagccggactgttaagg |
18663700 |
T |
|
| Q |
218 |
agaccttgagcaacagccagtct |
240 |
Q |
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||||| | ||||| ||| ||||| |
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| T |
18663701 |
agacccttagcaatagcaagtct |
18663723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 15080327 - 15080105
Alignment:
| Q |
18 |
tggatagtacctaaattaatgttcaccaataatcatggcaggagcacaacccattattcatatggtggaaccttttagcatctcggatgatgaattctct |
117 |
Q |
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|||| |||||||| ||||||||||||||||||| ||||||||| | |||||| || | ||| ||||||||||||||||||||||||||||||||||| |
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| T |
15080327 |
tggacagtacctaggttaatgttcaccaataatccctgcaggagcatagcccatttttaaaatgatggaaccttttagcatctcggatgatgaattctct |
15080228 |
T |
|
| Q |
118 |
tcccacaagcttagaaataaacttcactgcagtgtgacaatcaccacaaaaacggcgattctgaattactttaatagtagaacgaaccttactgttaaag |
217 |
Q |
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||||||||| | |||||||| ||||| |||||| |||||||||||||||| |||| |||||| ||||||| | || ||| |||| || |||||||| | |
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| T |
15080227 |
tcccacaagatcagaaataatcttcaatgcagtatgacaatcaccacaaacacggagattcttaattactctgatggtactacgagccggactgttaagg |
15080128 |
T |
|
| Q |
218 |
agaccttgagcaacagccagtct |
240 |
Q |
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||||| | ||||| ||| ||||| |
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| T |
15080127 |
agacccttagcaatagcaagtct |
15080105 |
T |
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