View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_low_68 (Length: 238)
Name: NF3184_low_68
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 14882705 - 14882484
Alignment:
| Q |
16 |
cagttcatgctttacaacaattctcttgaaggtagtattcctcagcaaatggtggatgttgcaaatatgacaagagttaatctttcaaagaataggctga |
115 |
Q |
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| T |
14882705 |
cagttcatgctttacaacaattctcttgaaggtggtattcctcagcaaatggtgaatgtagcaaatttgacaagagttaatctttcaaagaataggctga |
14882606 |
T |
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| Q |
116 |
atggaagtttggctccattgtgtagctccaaagattttctttcttttgatgtcacaggtaatgtgtttgatggtgaaattccttcaaatttgggaaactc |
215 |
Q |
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| T |
14882605 |
atggaagtttggctccattgtgtagctccagagattttctttcttttgatgtcacaggtaatgtgtttgatggtgaaattccttcaaatttgggaaactc |
14882506 |
T |
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| Q |
216 |
tttgtctcttaataggctaaga |
237 |
Q |
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||| |||||||||||||||||| |
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| T |
14882505 |
tttttctcttaataggctaaga |
14882484 |
T |
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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 39005096 - 39005273
Alignment:
| Q |
20 |
tcatgctttacaacaattctcttgaaggtagtattcctcagcaaatggtggatgttgcaaatatgacaagagttaatctttcaaagaataggctgaatgg |
119 |
Q |
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||||||| |||||||| ||||||||||||| ||||||| ||| || | |||| ||||| |||| || || ||||||||||||||||| ||||||| |
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| T |
39005096 |
tcatgctctacaacaactctcttgaaggtaaccttcctcaccaattgataaatgtagcaaacttgaccagggtgaatctttcaaagaatagattgaatgg |
39005195 |
T |
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| Q |
120 |
aagtttggctccattgtgtagctccaaagattttctttcttttgatgtcacaggtaatgtgtttgatggtgaaattcc |
197 |
Q |
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| T |
39005196 |
cagtatagctgctttgtgtagctctaaatcgtttcttactttcgatgttaccgataatgagtttgatggtgaaattcc |
39005273 |
T |
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