View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3184_low_70 (Length: 237)

Name: NF3184_low_70
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3184_low_70
NF3184_low_70
[»] chr6 (8 HSPs)
chr6 (1-222)||(11415189-11415410)
chr6 (160-213)||(11415409-11415462)
chr6 (160-213)||(11415656-11415709)
chr6 (160-213)||(11415718-11415771)
chr6 (160-213)||(11415780-11415833)
chr6 (160-216)||(11415533-11415589)
chr6 (168-213)||(11415479-11415524)
chr6 (164-213)||(11415598-11415647)
[»] chr8 (4 HSPs)
chr8 (160-222)||(11015744-11015806)
chr8 (160-213)||(11015692-11015745)
chr8 (182-213)||(11015644-11015675)
chr8 (187-222)||(11015805-11015840)


Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 11415189 - 11415410
Alignment:
Q  1 tttagtaaatgggttaattatgtagctggtaccctataaaattgggtattttgtaagtttagtagtataannnnnnngttaaacttttctatttttgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  11415189 tttagtaaatgggttaattatgtagctggtaccctataaaattgggtattttgtaagtttagtagtataatttttttgttaaacttttctatttttgaaa 11415288  T
Q  101 gaatattaacatgaaatgaaattgcatattaattaaatttcagattaaaattataaaggtttgatgagaagaggtaatcataataggattcataaggttt 200  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||  |||||||||||||||||||    
T  11415289 gaatattaacttgaaatgaaattgcatattaattaaatttcatattaaaaggataaaggtttgatgagaagaggtaatcggaataggattcataaggttt 11415388  T
Q  201 acctgaagaacatgaagcattt 222  Q
    ||||||||||||||||||||||    
T  11415389 acctgaagaacatgaagcattt 11415410  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 11415409 - 11415462
Alignment:
Q  160 tttgatgagaagaggtaatcataataggattcataaggtttacctgaagaacat 213  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  11415409 tttgatgagaagaggtaatcgaaataggattcataaggtttacctgaagaacat 11415462  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 11415656 - 11415709
Alignment:
Q  160 tttgatgagaagaggtaatcataataggattcataaggtttacctgaagaacat 213  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||||||    
T  11415656 tttgatgagaagaggtgatcggaataggattcataaggtttacctgaagaacat 11415709  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 11415718 - 11415771
Alignment:
Q  160 tttgatgagaagaggtaatcataataggattcataaggtttacctgaagaacat 213  Q
    ||||||| ||||||||||||  ||||||||||||||||||||||||||||||||    
T  11415718 tttgatgggaagaggtaatcggaataggattcataaggtttacctgaagaacat 11415771  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 11415780 - 11415833
Alignment:
Q  160 tttgatgagaagaggtaatcataataggattcataaggtttacctgaagaacat 213  Q
    ||||||| ||||||||||||  ||||||||||||||||||||||||||||||||    
T  11415780 tttgatgggaagaggtaatcggaataggattcataaggtttacctgaagaacat 11415833  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 11415533 - 11415589
Alignment:
Q  160 tttgatgagaagaggtaatcataataggattcataaggtttacctgaagaacatgaa 216  Q
    ||||||| ||||||||||||  ||||||||||||||| |||||||||||||||||||    
T  11415533 tttgatgggaagaggtaatcggaataggattcataagatttacctgaagaacatgaa 11415589  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 11415479 - 11415524
Alignment:
Q  168 gaagaggtaatcataataggattcataaggtttacctgaagaacat 213  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||    
T  11415479 gaagaggtaatcggaataggattcataaggtttacctgaagaacat 11415524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 11415598 - 11415647
Alignment:
Q  164 atgagaagaggtaatcataataggattcataaggtttacctgaagaacat 213  Q
    ||||||||||||||||  || |||||||||||||||| || |||||||||    
T  11415598 atgagaagaggtaatcggaacaggattcataaggtttgccggaagaacat 11415647  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 11015806 - 11015744
Alignment:
Q  160 tttgatgagaagaggtaatcataataggattcataaggtttacctgaagaacatgaagcattt 222  Q
    ||||||| |||||||||||   ||||||||| |||||||||||||||||||||||||| ||||    
T  11015806 tttgatgggaagaggtaattggaataggattgataaggtttacctgaagaacatgaagtattt 11015744  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 11015745 - 11015692
Alignment:
Q  160 tttgatgagaagaggtaatcataataggattcataaggtttacctgaagaacat 213  Q
    ||||||| ||||||||||| | ||| ||||||||||||||||||| ||||||||    
T  11015745 tttgatgggaagaggtaataagaattggattcataaggtttaccttaagaacat 11015692  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 213
Target Start/End: Complemental strand, 11015675 - 11015644
Alignment:
Q  182 aataggattcataaggtttacctgaagaacat 213  Q
    ||||||||||||||||||||||||||||||||    
T  11015675 aataggattcataaggtttacctgaagaacat 11015644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 11015840 - 11015805
Alignment:
Q  187 gattcataaggtttacctgaagaacatgaagcattt 222  Q
    ||||||||||||||||||||||||||||||| ||||    
T  11015840 gattcataaggtttacctgaagaacatgaagtattt 11015805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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