View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3184_low_74 (Length: 236)
Name: NF3184_low_74
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_low_74 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 25534541 - 25534744
Alignment:
| Q |
16 |
aatattgatgtacaaagacaaaatatgcttagggtgtagcttagtttatgtaaaatgtcctactgttaaatgttaggatgtagtgctttccttttgggat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25534541 |
aatattgatgtacaaagacaaaatatgcttagggtgtagctcagtttatgtaaaatgtcctactgttaaatgttaggatgtagtgctttccttttgggat |
25534640 |
T |
|
| Q |
116 |
tggattcagaatcctttgattcatcattcttcctcttcttttttcaaagttcgacctgagttggaccattcttaatcaagtaatcgaaccaaccaccttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25534641 |
tggattcagaatcctttgattcatcattcttcctcttcttttttcaaagttcgacctgagttggaccattcttaatcaagtaatcgaaccaaccaccttg |
25534740 |
T |
|
| Q |
216 |
agac |
219 |
Q |
| |
|
|||| |
|
|
| T |
25534741 |
agac |
25534744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 25526537 - 25526710
Alignment:
| Q |
16 |
aatattgatgtacaaagacaaaatatgcttagggtgtagcttagtttatgtaaaatgtcctactgttaaatgttaggatgtagtgctttccttttgggat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25526537 |
aatattgatgtacaaagacaaaatatgcttagggtgtagcttagtttatgtaaaatgtcctactgttaaatgttaggatgtagtgctttccttttgggat |
25526636 |
T |
|
| Q |
116 |
tggattcagaat-cctttgattcatcattcttcctcttcttttttcaaagttcgacctgagttggaccattcttaatcaa |
194 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||| ||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
25526637 |
tggattcagaatccctttgattcatcat------tcttcttatttcaaagttcgatccgagttggaccattcttaatcaa |
25526710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 67 - 219
Target Start/End: Complemental strand, 25515864 - 25515713
Alignment:
| Q |
67 |
aaaatgtcctactgttaaatgttaggatgtagtgctttccttttgggattggattcagaatc-ctttgattcatcattcttcctcttcttttttcaaagt |
165 |
Q |
| |
|
|||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||| || ||| | | |||||||||||| |
|
|
| T |
25515864 |
aaaatgtcatactgttaaatgttaggatgcactgctttccttttgggattggattcagaatcactatgattcatctttgttcttat--ttttttcaaagt |
25515767 |
T |
|
| Q |
166 |
tcgacctgagttggaccattcttaatcaagtaatcgaaccaaccaccttgagac |
219 |
Q |
| |
|
|| | ||||| |||||||||||||||||| ||| || | |||||||||||| |
|
|
| T |
25515766 |
gtgatccgagtttgaccattcttaatcaagtcatcatacaatccaccttgagac |
25515713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 98
Target Start/End: Original strand, 25541089 - 25541120
Alignment:
| Q |
67 |
aaaatgtcctactgttaaatgttaggatgtag |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
25541089 |
aaaatgtcctactgttaaatgttaggatgtag |
25541120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 159
Target Start/End: Original strand, 7946623 - 7946725
Alignment:
| Q |
59 |
gtttatgtaaaatgtcctactgttaaatg-ttaggatgtagtgctttccttttgggattggattcagaat-cctttgattcatcattcttcctcttcttt |
156 |
Q |
| |
|
|||| |||||||||||||||| ||||||| ||||||| ||||| ||| ||||| |||||||| |||| || ||||||||||||| ||||| || ||| || |
|
|
| T |
7946623 |
gtttgtgtaaaatgtcctactattaaatgtttaggatttagtgattttctttttggattggaatcaggatccctttgattcatctttctttcttttcatt |
7946722 |
T |
|
| Q |
157 |
ttt |
159 |
Q |
| |
|
||| |
|
|
| T |
7946723 |
ttt |
7946725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University