View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_low_76 (Length: 231)
Name: NF3184_low_76
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_low_76 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 28703936 - 28703756
Alignment:
| Q |
41 |
aaagtttatatagttaatctgatacttttaattataggatatttgatcctcttcattaatatcaacattgatgataataatgaaatttaacacggaatac |
140 |
Q |
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| T |
28703936 |
aaagtttatatagctaatcctatacttttaactataggatatttgatcctcttcattaatataaacattaatgataacaatgcaattttacacgaaatac |
28703837 |
T |
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| Q |
141 |
actatcaaggacatgtcaagggtagatcaaatatttctgcaaacatcttatagaaaaacaatatatctgaagaggtaatttc |
222 |
Q |
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| T |
28703836 |
ac-atcaaggacatgtcaagggttaatcaaatatttctgcaaacatcttatagaaaaacaagatatctgaagaggtaatttc |
28703756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 26907263 - 26907119
Alignment:
| Q |
1 |
cggtaacaataattagtaatattatatgtatgcaaaagccaaagtttatatagttaatctgatacttttaattataggatatttgatcctcttcattaat |
100 |
Q |
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| T |
26907263 |
cggtaacaataattagtaatattatatgtatgcaaaagccaaagtatatatagctaatcttctacttttaaccataggatatttgaccctcttcattaat |
26907164 |
T |
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| Q |
101 |
atcaacattgatgataataatgaaatttaacacggaatacactat |
145 |
Q |
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| T |
26907163 |
atcaacattaatgataataatgcaatttaacacgaaatacactat |
26907119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 28704007 - 28703956
Alignment:
| Q |
1 |
cggtaacaataattagtaatattatatgtatgcaaaagccaaagtttatata |
52 |
Q |
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| T |
28704007 |
cggtaacaataattagtaatattatatgtatgcaaaagccaaaatttatata |
28703956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 2871695 - 2871543
Alignment:
| Q |
1 |
cggtaacaataattagtaatattatatgtatgcaaaagccaaagtttatatagttaatctgatacttttaattataggatatttgatcctcttcattaat |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| || ||||| |||||||||||||||||| ||| |
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| T |
2871695 |
cggtaacaataattagtaatattatatgtatgtaaaagccaaagtttatatacctaatcctatacttt-aactatagaatatttgatcctcttcatcaat |
2871597 |
T |
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| Q |
101 |
atcaacattgatgataataatgaaatttaacacggaatacactatcaaggacat |
154 |
Q |
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| T |
2871596 |
atcaacattaatgataataatgcaaattaacacgaaatacattatcaaggacat |
2871543 |
T |
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