View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_low_79 (Length: 217)
Name: NF3184_low_79
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_low_79 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 5e-92; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 4803423 - 4803612
Alignment:
| Q |
1 |
tacttattgttaacttcattatctatttatcacaaaaaccaatttcactctattagtattacgtttaaaaattattagtaatattatgtgttttgtgaaa |
100 |
Q |
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| T |
4803423 |
tacttattgttaacttcattatctatttatcacaaaaaccaatttcactctattagtattacgtttaaaaagtattagtaat-ttatgtgttctgtgaaa |
4803521 |
T |
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| Q |
101 |
catatgtatagcgatagctagccccacatgggacgtttgagaagcttagagatgtaaactaccattataaataaataaagtgtagaacaca |
191 |
Q |
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| T |
4803522 |
catatttatagcgatagctagccccacatgggacgtttgagaagcttagagatgtaaactaccattataaataaataaagtgtagaacaca |
4803612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 4798625 - 4798677
Alignment:
| Q |
123 |
cccacatgggacgtttgagaagcttagagatgtaaactaccattataaataaa |
175 |
Q |
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| T |
4798625 |
cccacatcggaagtttgagaaacttagagatgtaaactaccattataaataaa |
4798677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 4825401 - 4825482
Alignment:
| Q |
92 |
tttgtgaaacatatgtatagcgatagctagccccacatgggacgtttgagaagcttagagatgtaaactaccattataaataa |
174 |
Q |
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| T |
4825401 |
tttgtgaaacatatgtagagcgataggttgtcccacatcggatgtttcagaagcatagaga-gtagaccaccattataaataa |
4825482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 4817795 - 4817835
Alignment:
| Q |
135 |
gtttgagaagcttagagatgtaaactaccattataaataaa |
175 |
Q |
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| T |
4817795 |
gtttgagaaacttagagatgtaaactactattataaataaa |
4817835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 4804812 - 4804864
Alignment:
| Q |
123 |
cccacatgggacgtttgagaagcttagagatgtaaactaccattataaataaa |
175 |
Q |
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| T |
4804812 |
cccacatcggatgtttgagaatcttagagaggcaaactatcattataaataaa |
4804864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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