View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_low_8 (Length: 575)
Name: NF3184_low_8
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 18 - 561
Target Start/End: Original strand, 31345954 - 31346502
Alignment:
| Q |
18 |
gtttaatgcaacaattcagtttttccaagattccatttccgtttcattgaagtgttccaa-------tttttcaccaagaggcatttaggatgtcaaacc |
110 |
Q |
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| T |
31345954 |
gtttaatgcaacaattcagtttttccaagattccatttccgtttcattgaagtgttgcaacttgcaatttttcaccaagaggcatttaggatgtcaaacc |
31346053 |
T |
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| Q |
111 |
ttcttgaccactttattcctttttccggttcttctaaatcatgtgggtttggagaatgatatcgtaaccatttttatggctgaaagtagacagttatcaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31346054 |
ttcttgaccactttattcctttttccggttcttctaaatcatgtgggtttggagaatgatatcataaccatttttatggctgaaagtagacagttatcaa |
31346153 |
T |
|
| Q |
211 |
tggccatttatgtaacccacttatcagctagcttaaacctgcccttcttagtagtgtttt-aatagcttttcagaagacggcgcagttagctatgacttg |
309 |
Q |
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| T |
31346154 |
tggccatttatgtaacccacttatcagctagcttaaacctgcccttcttagtagtgttttaaatagcttttcagaagacggcgcagttagctatgacttg |
31346253 |
T |
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| Q |
310 |
gttgtaagagatatgttatttacaaattacaatacctcttgcttttgatctccttgactagaggaattttatggtcatctaatagctgaatcagcttatc |
409 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31346254 |
gttgtaagagatatgttat-------ttacaatacctcttgcttttgatctccttgactagaggaattttatggtcatctaatagctgaatcagcttatc |
31346346 |
T |
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| Q |
410 |
cttaagaaaataaacaaatatattgtgtcttccattggatcggctcgcatatcatcataagaattttccatatatatgatggagataaggtgtagacctc |
509 |
Q |
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| T |
31346347 |
cttaagaaaataaacaaatatattgtgtcttccattggatcggctcgcatatcatcataagaattttccatatatatgatggagataagctgtagacctc |
31346446 |
T |
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| Q |
510 |
tccctcatatagcatgcatctt----ttgtttttgttgaatgaatttctctctgtg |
561 |
Q |
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| T |
31346447 |
tccctcatatagcatgcatcttttaattgtttttgttgaatgaatttctctatgtg |
31346502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 31356654 - 31357015
Alignment:
| Q |
18 |
gtttaatgcaacaattcagtttttccaagattccatttccgtttcattgaagtgttccaatttttcaccaagaggcatttaggatgtcaaaccttcttga |
117 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31356654 |
gtttaatgcaacaattcagtttttccaagttttcatttccgtttcattgaagtgttgcaatttttcaccaagaggcatttaggatgtcaaaccttcttga |
31356753 |
T |
|
| Q |
118 |
ccactttattcctttttccggttcttctaaatcatgtgggtttggagaatgatatcgtaaccatttttatggctgaaagtagacagttatcaatggccat |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||| |
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| T |
31356754 |
ccactttattcatttttccggttcttctaaatcatgtgggtttggagaatgatatcgtaaccatttttatggctgaaaatagatagctatcaatggccat |
31356853 |
T |
|
| Q |
218 |
ttatgtaacccacttatcagctagcttaaacctgcccttcttagtagtgtttt-aatagcttttcagaagacggcgcagttagctatgacttggttgtaa |
316 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||| ||||| ||||||||||||||||||||| |
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| T |
31356854 |
ttatgccacccacttatcagctagcttaaacatgcccttcttagtagtgttttaaatagcttttcggaagacagcgcaattagctatgacttggttgtaa |
31356953 |
T |
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| Q |
317 |
gagatatgttatttacaaattacaatacctcttgcttttgatctccttgactagaggaattt |
378 |
Q |
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| T |
31356954 |
gagatatgttatttacaaattacaatacctcttgcttttgatctccttgactagaggaattt |
31357015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 450 - 556
Target Start/End: Original strand, 31357036 - 31357139
Alignment:
| Q |
450 |
cggctcgcatatcatcataagaattttccatatatatgatggagataaggtgtagacctctccctcatatagcatgcatcttttgtttttgttgaatgaa |
549 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| |
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| T |
31357036 |
cggctcacatatcatcataagaattttccatatatatgatggagataaggtgtagacct---cctcagatagcatgcatcttttctttttgttgaatgaa |
31357132 |
T |
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| Q |
550 |
tttctct |
556 |
Q |
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||||||| |
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| T |
31357133 |
tttctct |
31357139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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