View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3184_low_82 (Length: 214)
Name: NF3184_low_82
Description: NF3184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3184_low_82 |
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Alignment Details
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 91 - 193
Target Start/End: Complemental strand, 34879681 - 34879579
Alignment:
| Q |
91 |
gttccacaagaaaaacaaaattgaggggaagctaagtacctccaacagcagacacatcaacatttcctagaagctgttctttccatttcctcaagctttc |
190 |
Q |
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| T |
34879681 |
gttccacaagaaaaacaaaattgaggggaagctaagtacctccaacagcagacacatcaacatttcctagaagctgttctttccatttcctcaagctttc |
34879582 |
T |
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| Q |
191 |
atc |
193 |
Q |
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||| |
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| T |
34879581 |
atc |
34879579 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 38371605 - 38371674
Alignment:
| Q |
124 |
aagtacctccaacagcagacacatcaacatttcctagaagctgttctttccatttcctcaagctttcatc |
193 |
Q |
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||||||||||||||||||| | ||||||| | || ||||| || ||||||||||| ||||| |||||||| |
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| T |
38371605 |
aagtacctccaacagcagatatatcaacactacccagaagttgctctttccattttctcaaactttcatc |
38371674 |
T |
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