View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3185_high_16 (Length: 266)
Name: NF3185_high_16
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3185_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 20075860 - 20076107
Alignment:
| Q |
11 |
cagagatggaagcaacattgataagagatcaacaatagaaggaacacagtagtcctcaattgcttgcaccacaagttacagaagccaagcactagtgaag |
110 |
Q |
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| T |
20075860 |
cagagatggaagcagcattgataagagatcaacgacaggaggaacacagtggtcttcaattgcttgcaccacaagttacagaagccaagcactagtgaag |
20075959 |
T |
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| Q |
111 |
agttagttagagacaataactaacttccttgaatataggaaagttgggcagtgttctagtgtagatagtacatattagtcttacagtgcagtagcaataa |
210 |
Q |
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| T |
20075960 |
agttagttagagataataactaacttccttgaatataggaaagttaggcagtgatgtagtgtagctagtacatgttagtcttatagtgcagtagcaataa |
20076059 |
T |
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| Q |
211 |
ccaactataaaaagacaattttgtaactaacttcattttcaatgagaatt |
260 |
Q |
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|||||||| ||||||||||| | |||||||||||| |||||||||||||| |
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| T |
20076060 |
ccaactat-aaaagacaattctataactaacttca-tttcaatgagaatt |
20076107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 20078987 - 20079233
Alignment:
| Q |
12 |
agagatggaagcaacattgataagagatcaacaatagaaggaacacagtagtcctcaattgcttgcaccacaagttacagaagccaagcactagtgaaga |
111 |
Q |
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||||||||||||| ||||||||||||||||||||||| | ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20078987 |
agagatggaagcagcattgataagagatcaacaataggacgaacacagtggtcttcaattgcttgcaccacaagttacagaagccaagcactagtgaaga |
20079086 |
T |
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| Q |
112 |
gttagttagagacaataactaacttccttgaatataggaaagttgggcagtgttctagtgtagatagtacatattagtcttacagtgcagtagcaataac |
211 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||| ||||||| | ||||||| |||||||| ||||||||| ||||||||||||||||| |
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| T |
20079087 |
gttagttagagataataagtaacttccttgaatataggaaagttaggcagtgatgcagtgtagctagtacatgttagtcttatagtgcagtagcaataac |
20079186 |
T |
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| Q |
212 |
caactataaaaagacaattttgtaactaacttcattttcaatgagaatt |
260 |
Q |
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||||||| ||||||||||| |||||||||||||||||| |||||||||| |
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| T |
20079187 |
caactat-aaaagacaattctgtaactaacttcatttt-aatgagaatt |
20079233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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