View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3185_high_17 (Length: 262)

Name: NF3185_high_17
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3185_high_17
NF3185_high_17
[»] chr7 (17 HSPs)
chr7 (175-256)||(18786585-18786666)
chr7 (112-163)||(7574116-7574167)
chr7 (112-166)||(1282539-1282593)
chr7 (112-165)||(3062247-3062300)
chr7 (112-165)||(9915512-9915565)
chr7 (112-165)||(9923424-9923477)
chr7 (112-165)||(42039656-42039709)
chr7 (112-165)||(45196804-45196857)
chr7 (112-164)||(25867259-25867311)
chr7 (113-165)||(24505478-24505530)
chr7 (114-165)||(15584541-15584592)
chr7 (112-162)||(42902389-42902439)
chr7 (116-165)||(17335095-17335144)
chr7 (112-165)||(32186423-32186476)
chr7 (112-165)||(41715139-41715192)
chr7 (113-165)||(26605056-26605108)
chr7 (121-165)||(38665457-38665501)
[»] chr3 (31 HSPs)
chr3 (175-251)||(1625639-1625715)
chr3 (112-165)||(26409630-26409683)
chr3 (112-165)||(882078-882131)
chr3 (115-169)||(35320356-35320410)
chr3 (112-165)||(14460538-14460591)
chr3 (112-165)||(51235875-51235928)
chr3 (112-165)||(52782159-52782212)
chr3 (112-164)||(35352191-35352243)
chr3 (113-165)||(36019416-36019468)
chr3 (115-166)||(44962961-44963012)
chr3 (112-166)||(49950923-49950977)
chr3 (112-165)||(32720340-32720393)
chr3 (112-165)||(37567572-37567625)
chr3 (113-165)||(33830885-33830937)
chr3 (123-166)||(45635680-45635723)
chr3 (119-165)||(2667986-2668032)
chr3 (115-165)||(45927577-45927627)
chr3 (112-162)||(48388762-48388812)
chr3 (115-165)||(50465829-50465879)
chr3 (116-166)||(53376948-53376998)
chr3 (120-169)||(29347307-29347356)
chr3 (112-165)||(44500135-44500188)
chr3 (113-166)||(44653525-44653578)
chr3 (113-166)||(48925410-48925463)
chr3 (121-165)||(8966293-8966337)
chr3 (113-165)||(9252207-9252259)
chr3 (112-168)||(9322426-9322482)
chr3 (121-169)||(19547851-19547899)
chr3 (113-165)||(42479039-42479091)
chr3 (113-169)||(42621844-42621900)
chr3 (114-166)||(52162738-52162790)
[»] chr5 (21 HSPs)
chr5 (112-165)||(32624530-32624583)
chr5 (112-162)||(37962997-37963047)
chr5 (112-165)||(25684417-25684470)
chr5 (112-163)||(16730077-16730128)
chr5 (112-166)||(31236587-31236641)
chr5 (112-161)||(32063529-32063578)
chr5 (112-165)||(43411517-43411570)
chr5 (112-164)||(4095012-4095064)
chr5 (113-161)||(8068323-8068371)
chr5 (112-164)||(28769947-28769999)
chr5 (113-164)||(19126267-19126318)
chr5 (112-166)||(2148126-2148180)
chr5 (112-158)||(22798074-22798120)
chr5 (116-165)||(9530720-9530769)
chr5 (112-165)||(10453634-10453687)
chr5 (116-165)||(22279217-22279266)
chr5 (112-165)||(23189067-23189120)
chr5 (113-166)||(39540718-39540771)
chr5 (112-165)||(41631572-41631625)
chr5 (112-165)||(42534393-42534446)
chr5 (113-165)||(40340783-40340835)
[»] chr1 (39 HSPs)
chr1 (112-165)||(20280575-20280628)
chr1 (112-164)||(41550148-41550200)
chr1 (112-165)||(33234054-33234107)
chr1 (112-165)||(33771646-33771699)
chr1 (112-166)||(2684322-2684376)
chr1 (112-166)||(7426659-7426713)
chr1 (112-166)||(28094777-28094831)
chr1 (112-166)||(49739484-49739538)
chr1 (112-165)||(10061511-10061564)
chr1 (112-165)||(14131352-14131405)
chr1 (112-165)||(39853313-39853366)
chr1 (112-164)||(31570972-31571024)
chr1 (113-163)||(9222856-9222906)
chr1 (113-167)||(25702433-25702487)
chr1 (115-165)||(33828864-33828914)
chr1 (115-165)||(33839052-33839102)
chr1 (112-166)||(52079786-52079840)
chr1 (112-165)||(3150185-3150238)
chr1 (112-165)||(9259816-9259869)
chr1 (112-165)||(29171519-29171572)
chr1 (112-165)||(40850375-40850428)
chr1 (113-166)||(43224644-43224697)
chr1 (112-165)||(47860755-47860808)
chr1 (112-165)||(49289229-49289282)
chr1 (112-165)||(50502344-50502397)
chr1 (113-165)||(52345599-52345651)
chr1 (113-164)||(31015889-31015940)
chr1 (115-166)||(37765252-37765303)
chr1 (112-163)||(44647247-44647298)
chr1 (114-168)||(13202933-13202987)
chr1 (112-162)||(27038897-27038947)
chr1 (116-166)||(48481207-48481257)
chr1 (115-165)||(48868062-48868112)
chr1 (116-165)||(5057557-5057606)
chr1 (113-170)||(12105155-12105212)
chr1 (112-165)||(14191248-14191301)
chr1 (112-165)||(41321359-41321412)
chr1 (112-165)||(52273719-52273772)
chr1 (118-165)||(23539942-23539990)
[»] chr8 (20 HSPs)
chr8 (112-165)||(3053153-3053206)
chr8 (112-159)||(29039619-29039666)
chr8 (112-166)||(36835696-36835750)
chr8 (115-165)||(38803791-38803841)
chr8 (112-165)||(43182724-43182777)
chr8 (113-165)||(28896905-28896957)
chr8 (112-164)||(35037817-35037869)
chr8 (112-164)||(38627341-38627393)
chr8 (112-167)||(41571717-41571772)
chr8 (112-166)||(196065-196119)
chr8 (112-166)||(310902-310956)
chr8 (112-166)||(18844158-18844212)
chr8 (115-163)||(7223840-7223888)
chr8 (112-164)||(38971818-38971870)
chr8 (112-164)||(39002916-39002968)
chr8 (115-165)||(14913844-14913894)
chr8 (112-165)||(21835784-21835838)
chr8 (112-169)||(464604-464661)
chr8 (113-166)||(29265588-29265641)
chr8 (123-159)||(31893697-31893733)
[»] chr2 (23 HSPs)
chr2 (115-172)||(44068369-44068426)
chr2 (113-167)||(3723939-3723993)
chr2 (112-165)||(21425563-21425616)
chr2 (112-165)||(37725905-37725958)
chr2 (113-165)||(2316838-2316890)
chr2 (112-164)||(28394422-28394474)
chr2 (113-165)||(35292866-35292918)
chr2 (113-165)||(40533606-40533658)
chr2 (112-162)||(45555736-45555786)
chr2 (112-165)||(5084839-5084892)
chr2 (112-165)||(16814851-16814904)
chr2 (112-165)||(16854131-16854184)
chr2 (112-165)||(18576300-18576353)
chr2 (112-165)||(36947482-36947535)
chr2 (112-164)||(18008956-18009008)
chr2 (112-163)||(21836639-21836690)
chr2 (115-166)||(36049463-36049514)
chr2 (115-165)||(13568212-13568262)
chr2 (116-165)||(6657803-6657852)
chr2 (116-165)||(7504022-7504071)
chr2 (112-165)||(10711630-10711683)
chr2 (112-165)||(19635989-19636042)
chr2 (112-165)||(19834582-19834635)
[»] chr6 (12 HSPs)
chr6 (112-168)||(34969786-34969842)
chr6 (113-167)||(18871278-18871332)
chr6 (119-165)||(21970667-21970713)
chr6 (112-166)||(29638733-29638787)
chr6 (112-165)||(35224829-35224882)
chr6 (113-165)||(1339209-1339261)
chr6 (116-165)||(24025792-24025841)
chr6 (119-163)||(18667689-18667733)
chr6 (113-168)||(19474025-19474081)
chr6 (113-165)||(29023619-29023671)
chr6 (113-165)||(33574707-33574759)
chr6 (113-165)||(33574885-33574937)
[»] chr4 (21 HSPs)
chr4 (115-159)||(56017143-56017187)
chr4 (116-162)||(27636098-27636144)
chr4 (115-169)||(42244533-42244587)
chr4 (112-166)||(44998764-44998818)
chr4 (112-165)||(2526525-2526578)
chr4 (112-165)||(10778991-10779044)
chr4 (113-170)||(38955037-38955094)
chr4 (112-173)||(54505566-54505627)
chr4 (112-163)||(24292332-24292383)
chr4 (112-166)||(36570002-36570056)
chr4 (112-162)||(46630648-46630698)
chr4 (113-166)||(16004532-16004585)
chr4 (112-165)||(27967864-27967917)
chr4 (113-164)||(21515344-21515395)
chr4 (122-169)||(29582329-29582376)
chr4 (115-162)||(42080330-42080377)
chr4 (113-168)||(46663680-46663735)
chr4 (112-166)||(54499928-54499982)
chr4 (116-162)||(55129772-55129818)
chr4 (121-170)||(1857166-1857215)
chr4 (116-165)||(33612881-33612930)
[»] scaffold0493 (1 HSPs)
scaffold0493 (112-166)||(1741-1795)
[»] scaffold0239 (1 HSPs)
scaffold0239 (113-165)||(15736-15788)
[»] scaffold0022 (1 HSPs)
scaffold0022 (112-165)||(166419-166472)


Alignment Details
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 175 - 256
Target Start/End: Complemental strand, 18786666 - 18786585
Alignment:
Q  175 ctatttaattaattatcacttgcaattgaattcatagtttgtatctgtgtcattcttcattatcactttcagttcatctcac 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18786666 ctatttaattaattatcacttgcaattgaattcatagtttgtatctgtgtcattcttcattatcactttcagttcatttcac 18786585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 7574167 - 7574116
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttc 163  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  7574167 gtgaaacaagagtactggtacactaaaatttttgagtgtaccgtagaagttc 7574116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 1282539 - 1282593
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    |||||||||||||||||||||||| ||| || |||||||||| ||||||||||||    
T  1282539 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccca 1282593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 3062247 - 3062300
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  3062247 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccc 3062300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 9915512 - 9915565
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  9915512 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccc 9915565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 9923424 - 9923477
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  9923424 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccc 9923477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 42039656 - 42039709
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  42039656 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccc 42039709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 45196857 - 45196804
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  45196857 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccc 45196804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 25867259 - 25867311
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcc 164  Q
    |||||||||||||||||||||||| ||| || |||||||||| ||||||||||    
T  25867259 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttcc 25867311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 24505478 - 24505530
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||||||||| ||| || |||||||||| || ||||||||    
T  24505478 tgaaacaagagtaccggtacactcaaaattgtgagtgtaccataaaagttccc 24505530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 15584592 - 15584541
Alignment:
Q  114 gaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||||||||  |||||  |||||| ||||||||||||||    
T  15584592 gaaacaagagtaccggtacactgtaatttacgagtgtgccgtagaagttccc 15584541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 42902439 - 42902389
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagtt 162  Q
    |||||| ||||||||||||||||| ||| || ||||||||||||| |||||    
T  42902439 gtgaaataagagtaccggtacacttaaaattgtgagtgtaccgtataagtt 42902389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 17335095 - 17335144
Alignment:
Q  116 aacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||| ||| || || ||||||||| |||||||||    
T  17335095 aacaagagtaccggtacactcaaaattgtgggtgtaccgttgaagttccc 17335144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 32186476 - 32186423
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||||  ||||| |||||    
T  32186476 gtgaaacaagagtaccggtacactcaaaattgtgagtgtactatagaaattccc 32186423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 41715192 - 41715139
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||| ||||||||| ||| || ||||||||| |||||| |||||    
T  41715192 gtgaaacaagagtatcggtacactcaaaattgtgagtgtactgtagaaattccc 41715139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 26605108 - 26605056
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||| |||||||||||||||||   | ||| ||||||||||||||||||||||    
T  26605108 tgaagcaagagtaccggtacacctcattttgtgagtgtaccgtagaagttccc 26605056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 38665501 - 38665457
Alignment:
Q  121 gagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||  | ||| ||||||||||||||||||||||    
T  38665501 gagtaccggtacacttcattttgtgagtgtaccgtagaagttccc 38665457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 1625715 - 1625639
Alignment:
Q  175 ctatttaattaattatcacttgcaattgaattcatagtttgtatctgtgtcattcttcattatcactttcagttcat 251  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1625715 ctatttaattaattgtcacttgcaagtgaattcatagtttgtatctgtgtcattcttcattatcactttcagttcat 1625639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 26409683 - 26409630
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26409683 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 26409630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 882078 - 882131
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||| |||| ||||||||||||||||| |||||||||||||||||||||    
T  882078 gtgaaacaaaagtatcggtacactaaaatttccgagtgtaccgtagaagttccc 882131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 35320410 - 35320356
Alignment:
Q  115 aaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcccaaaa 169  Q
    ||||||||||||||||||||| ||| || |||||||||| |||||||||||||||    
T  35320410 aaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttcccaaaa 35320356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 14460538 - 14460591
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  14460538 gtgaaacaagagtaccggtacactcaaaattatgagtgtaccatagaagttccc 14460591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 51235875 - 51235928
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  51235875 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccc 51235928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 52782212 - 52782159
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  52782212 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccc 52782159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 35352243 - 35352191
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcc 164  Q
    |||||||||||||||||||||||| ||| || |||||||||| ||||||||||    
T  35352243 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttcc 35352191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 36019468 - 36019416
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  36019468 tgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccc 36019416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 44962961 - 44963012
Alignment:
Q  115 aaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    ||||||||||||||||||||| ||| || |||||||||| ||||||||||||    
T  44962961 aaacaagagtaccggtacacttaaaattgtgagtgtaccatagaagttccca 44963012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 49950977 - 49950923
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    |||||| ||||||||||||||||| ||| || |||||||||| ||||||||||||    
T  49950977 gtgaaataagagtaccggtacactcaaaattgtgagtgtaccatagaagttccca 49950923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 32720340 - 32720393
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||| |||||| ||| || |||||||||| |||||||||||    
T  32720340 gtgaaacaagagtaccgatacactcaaaattgtgagtgtaccatagaagttccc 32720393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 37567572 - 37567625
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||| |||||| ||| || |||||||||| |||||||||||    
T  37567572 gtgaaacaagagtaccgatacactcaaaattatgagtgtaccatagaagttccc 37567625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 33830885 - 33830937
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||| ||||||| ||| || |||||||||| |||||||||||    
T  33830885 tgaaacaagagtaccagtacactcaaaattgtgagtgtaccatagaagttccc 33830937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 45635723 - 45635680
Alignment:
Q  123 gtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    |||||||||||||  ||||| |||||||||||||||||||||||    
T  45635723 gtaccggtacactttaatttatgagtgtaccgtagaagttccca 45635680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 2667986 - 2668032
Alignment:
Q  119 aagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||| ||| ||  |||||||||||||||||||||    
T  2667986 aagagtaccggtacactcaaaattgcgagtgtaccgtagaagttccc 2668032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 45927577 - 45927627
Alignment:
Q  115 aaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||| |||||| ||| || |||||||||| |||||||||||    
T  45927577 aaacaagagtaccgatacactcaaaattatgagtgtaccatagaagttccc 45927627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 48388812 - 48388762
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagtt 162  Q
    |||||||||||||||| ||||||| ||| || |||||||||| ||||||||    
T  48388812 gtgaaacaagagtaccagtacactcaaaattgtgagtgtaccatagaagtt 48388762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 50465829 - 50465879
Alignment:
Q  115 aaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||| |||||||||||| ||| || |||||||||| |||||||||||    
T  50465829 aaacaagaataccggtacactcaaaattgtgagtgtaccatagaagttccc 50465879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 53376948 - 53376998
Alignment:
Q  116 aacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    |||||||||||||||||| | ||| || |||||||||| ||||||||||||    
T  53376948 aacaagagtaccggtacattcaaaattgtgagtgtaccatagaagttccca 53376998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 29347356 - 29347307
Alignment:
Q  120 agagtaccggtacactaaaatttctgagtgtaccgtagaagttcccaaaa 169  Q
    ||||||||||||||||  |||||  | |||||||||||||||||||||||    
T  29347356 agagtaccggtacactgcaatttgcgggtgtaccgtagaagttcccaaaa 29347307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 44500188 - 44500135
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||| |||||||| ||| || |||||||||| ||||| |||||    
T  44500188 gtgaaacaagagtactggtacactcaaaattgtgagtgtaccatagaatttccc 44500135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 44653525 - 44653578
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    ||||| ||||||||||||||||   | ||| |||||||||||||||||||||||    
T  44653525 tgaaaaaagagtaccggtacacctcattttgtgagtgtaccgtagaagttccca 44653578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 48925463 - 48925410
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    ||||||||||||||| ||||||| ||| || |||||||||| ||||| ||||||    
T  48925463 tgaaacaagagtaccagtacactcaaaattgtgagtgtaccatagaaattccca 48925410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 8966293 - 8966337
Alignment:
Q  121 gagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||   ||||| ||||||||||||||||||||||    
T  8966293 gagtaccggtacaccttaatttatgagtgtaccgtagaagttccc 8966337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 9252207 - 9252259
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||| |||||||||||||||||   |||||  |||||||||||||||||||||    
T  9252207 tgaagcaagagtaccggtacacctcaatttacgagtgtaccgtagaagttccc 9252259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 9322482 - 9322426
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcccaaa 168  Q
    |||||||||||||||| || |||| ||| || |||| ||||| ||||||||||||||    
T  9322482 gtgaaacaagagtaccagtccactcaaaattgtgagggtaccatagaagttcccaaa 9322426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 19547851 - 19547899
Alignment:
Q  121 gagtaccggtacactaaaatttctgagtgtaccgtagaagttcccaaaa 169  Q
    ||||||||||||||   ||||| || |||||||||||||||||||||||    
T  19547851 gagtaccggtacaccttaatttgtgggtgtaccgtagaagttcccaaaa 19547899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 42479039 - 42479091
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||||||||   | ||| ||| ||||||||||||||||||    
T  42479039 tgaaacaagagtaccggtacaccttattttgtgaatgtaccgtagaagttccc 42479091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 42621900 - 42621844
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcccaaaa 169  Q
    |||| ||||||||| |||||||   | ||| ||||||||||||||||||||||||||    
T  42621900 tgaagcaagagtactggtacacctcattttgtgagtgtaccgtagaagttcccaaaa 42621844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 52162738 - 52162790
Alignment:
Q  114 gaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    ||||||||||||||||||||||  |||||  ||||||| ||||||||| ||||    
T  52162738 gaaacaagagtaccggtacactgcaatttacgagtgtatcgtagaagtcccca 52162790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 32624530 - 32624583
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32624530 gtgaaacaagagtaccggtacactaaaatttctgagtataccgtagaagttccc 32624583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 37963047 - 37962997
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagtt 162  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  37963047 gtgaaacaagagtaccggtacactacaatttctgagtgtaccatagaagtt 37962997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 25684417 - 25684470
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  25684417 gtgaaacaagagtaccggtacactcaaaattatgagtgtaccatagaagttccc 25684470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 16730077 - 16730128
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttc 163  Q
    |||||||||||||||||||||||| ||| || |||||||||| |||||||||    
T  16730077 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 16730128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 31236641 - 31236587
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    |||||||||||||||||||||||| ||| || |||||||||| ||||| ||||||    
T  31236641 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaaattccca 31236587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 32063578 - 32063529
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagt 161  Q
    |||||||||||||||||||||||| ||| || |||||||||| |||||||    
T  32063578 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagt 32063529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 43411570 - 43411517
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || | |||||||| |||||||||||    
T  43411570 gtgaaacaagagtaccggtacactcaaaattgttagtgtaccatagaagttccc 43411517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 4095012 - 4095064
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcc 164  Q
    ||||||||||||||| |||||||| ||| || |||||||||| ||||||||||    
T  4095012 gtgaaacaagagtactggtacactcaaaattgtgagtgtaccatagaagttcc 4095064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 8068371 - 8068323
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagt 161  Q
    ||||||||||||||||||||||| ||| || |||||||||| |||||||    
T  8068371 tgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagt 8068323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 28769999 - 28769947
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcc 164  Q
    |||||||||||||||||||| ||| ||| || |||||||||| ||||||||||    
T  28769999 gtgaaacaagagtaccggtatactcaaaattgtgagtgtaccatagaagttcc 28769947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 19126267 - 19126318
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcc 164  Q
    |||||||||||||||| |||||| ||| || |||||||||| ||||||||||    
T  19126267 tgaaacaagagtaccgttacacttaaaattatgagtgtaccatagaagttcc 19126318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 2148180 - 2148126
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    ||||||||||||||||  |||||| ||| || |||||||||| ||||||||||||    
T  2148180 gtgaaacaagagtaccattacacttaaaattgtgagtgtaccatagaagttccca 2148126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 22798120 - 22798074
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtaga 158  Q
    |||||||||||||||||||||||| ||| || |||||||||| ||||    
T  22798120 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccataga 22798074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 9530720 - 9530769
Alignment:
Q  116 aacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||| ||| || || ||||||| |||||||||||    
T  9530720 aacaagagtaccggtacactcaaaattgtgggtgtaccatagaagttccc 9530769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 10453634 - 10453687
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||| ||||||| |||||| ||| || |||||||||| |||||||||||    
T  10453634 gtgaaacaaaagtaccgatacactcaaaattgtgagtgtaccatagaagttccc 10453687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 22279266 - 22279217
Alignment:
Q  116 aacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||| ||| || || ||||||||| |||||||||    
T  22279266 aacaagagtaccggtacactcaaaattgtgggtgtaccgttgaagttccc 22279217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 23189120 - 23189067
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||| ||||| |||||||| ||| || |||||||||| |||||||||||    
T  23189120 gtgaaacaatagtactggtacactcaaaattgtgagtgtaccatagaagttccc 23189067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 39540771 - 39540718
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    |||||||||| || ||||||||| ||| || |||||||||| ||||||||||||    
T  39540771 tgaaacaagaataacggtacactcaaaattgtgagtgtaccatagaagttccca 39540718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 41631572 - 41631625
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||| ||||||| ||| || | |||||||| |||||||||||    
T  41631572 gtgaaacaagagtaccagtacactcaaaattataagtgtaccatagaagttccc 41631625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 42534446 - 42534393
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||| |||| ||||||||| ||| || |||||||||| |||||||||||    
T  42534446 gtgaaacaaaagtatcggtacactcaaaattgtgagtgtaccatagaagttccc 42534393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 40340783 - 40340835
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||| ||||| ||| || |||||||||| || ||||||||    
T  40340783 tgaaacaagagtaccgggacactcaaaattgtgagtgtaccataaaagttccc 40340835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 20280575 - 20280628
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20280575 gtgaaacaagagtaccggtacactaaaatttcttagtgtaccgtagaagttccc 20280628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 41550200 - 41550148
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcc 164  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41550200 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccatagaagttcc 41550148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 33234107 - 33234054
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||    
T  33234107 gtgaaacaaaagtactggtacactaaaatttctgaatgtaccgtagaagttccc 33234054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 33771699 - 33771646
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||| |||||||||||| |||||||||| |||||||||||||    
T  33771699 gtgaaacaagagtaccagtacactaaaatctctgagtgtatcgtagaagttccc 33771646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 2684322 - 2684376
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    |||||||||||||||||||||||| ||| || |||||||||| ||||||||||||    
T  2684322 gtgaaacaagagtaccggtacactcaaaattatgagtgtaccatagaagttccca 2684376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 7426713 - 7426659
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    |||||| ||||||||||||||||| ||| || |||||||||||||||||||||||    
T  7426713 gtgaaagaagagtaccggtacactcaaaattatgagtgtaccgtagaagttccca 7426659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 28094831 - 28094777
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    ||||||||| | ||||| ||||||||||||| |||||||||||||||||||||||    
T  28094831 gtgaaacaaaaataccgatacactaaaatttttgagtgtaccgtagaagttccca 28094777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 49739484 - 49739538
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    ||||||||||||||||||||||||| ||||| ||| ||||| |||||||||||||    
T  49739484 gtgaaacaagagtaccggtacactacaatttttgaatgtactgtagaagttccca 49739538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 10061511 - 10061564
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  10061511 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccc 10061564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 14131405 - 14131352
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  14131405 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccc 14131352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 39853313 - 39853366
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  39853313 gtgaaacaagagtaccggtacactcaaaattatgagtgtaccatagaagttccc 39853366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 31571024 - 31570972
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcc 164  Q
    |||||||||||||||||||||||| ||| || |||||||||| ||||||||||    
T  31571024 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttcc 31570972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 9222906 - 9222856
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttc 163  Q
    ||||||||||||||||||||||| ||| || |||||||||| |||||||||    
T  9222906 tgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 9222856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 25702487 - 25702433
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcccaa 167  Q
    |||| |||||||||||||||||   ||||| ||||||||||||||||||||||||    
T  25702487 tgaagcaagagtaccggtacacctcaatttatgagtgtaccgtagaagttcccaa 25702433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 33828914 - 33828864
Alignment:
Q  115 aaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  33828914 aaacaagagtaccggtacacttaaaattgtgagtgtaccatagaagttccc 33828864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 33839052 - 33839102
Alignment:
Q  115 aaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  33839052 aaacaagagtaccggtacacttaaaattgtgagtgtaccatagaagttccc 33839102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 52079786 - 52079840
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    |||||||||||||||||||||||| ||| || |||||||| | ||||||||||||    
T  52079786 gtgaaacaagagtaccggtacactcaaaattatgagtgtatcatagaagttccca 52079840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 3150238 - 3150185
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||| |||||| ||| || |||||||||| |||||||||||    
T  3150238 gtgaaacaagagtaccgatacactcaaaattgtgagtgtaccatagaagttccc 3150185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 9259869 - 9259816
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||| | ||| || |||||||||| |||||||||||    
T  9259869 gtgaaacaagagtaccggtacattcaaaattgtgagtgtaccatagaagttccc 9259816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 29171519 - 29171572
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||||  |||||||||||    
T  29171519 gtgaaacaagagtaccggtacactcaaaattgtgagtgtacgatagaagttccc 29171572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 40850375 - 40850428
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||| |||||||||||| ||| || |||||||||| |||||||||||    
T  40850375 gtgaaacaagaataccggtacactcaaaattgtgagtgtaccatagaagttccc 40850428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 43224697 - 43224644
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    ||||| ||||||||||||||||| ||| || |||||||||| ||||||||||||    
T  43224697 tgaaaaaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccca 43224644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 47860808 - 47860755
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||| |||||| ||| || |||||||||| |||||||||||    
T  47860808 gtgaaacaagagtaccgatacactcaaaattgtgagtgtaccatagaagttccc 47860755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 49289282 - 49289229
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||||| ||||| |||||    
T  49289282 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaaattccc 49289229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 50502397 - 50502344
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || ||| |||||| |||||||||||    
T  50502397 gtgaaacaagagtaccggtacactcaaaattgtgaatgtaccatagaagttccc 50502344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 52345651 - 52345599
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||||||||   | ||| ||||||||||||||||||||||    
T  52345651 tgaaacaagagtaccggtacacctcactttgtgagtgtaccgtagaagttccc 52345599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 31015940 - 31015889
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcc 164  Q
    ||||||||||||| ||||||||| ||| || |||||||||| ||||||||||    
T  31015940 tgaaacaagagtatcggtacacttaaaattgtgagtgtaccatagaagttcc 31015889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 37765303 - 37765252
Alignment:
Q  115 aaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    ||||||||||||||||||||| ||| || |||||||||| || |||||||||    
T  37765303 aaacaagagtaccggtacactcaaaattgtgagtgtaccataaaagttccca 37765252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 44647298 - 44647247
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttc 163  Q
    |||||||||||||||||||||||| ||| || ||||| |||| |||||||||    
T  44647298 gtgaaacaagagtaccggtacactcaaaattgtgagtctaccatagaagttc 44647247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 13202987 - 13202933
Alignment:
Q  114 gaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcccaaa 168  Q
    |||||| ||||||||||||||   | ||||||||||||| |||||||||||||||    
T  13202987 gaaacaggagtaccggtacacctcattttctgagtgtacagtagaagttcccaaa 13202933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 27038897 - 27038947
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagtt 162  Q
    |||||| ||||||||||||||||| ||| || |||||||||| ||||||||    
T  27038897 gtgaaagaagagtaccggtacactcaaaattgtgagtgtaccatagaagtt 27038947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 48481207 - 48481257
Alignment:
Q  116 aacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    |||||||||||||||||||| ||| || || ||||||| ||||||||||||    
T  48481207 aacaagagtaccggtacactcaaaattgtgggtgtaccatagaagttccca 48481257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 48868112 - 48868062
Alignment:
Q  115 aaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||||||| ||| || |||||||| | |||||||||||    
T  48868112 aaacaagagtaccggtacactcaaaattgtgagtgtatcatagaagttccc 48868062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 5057557 - 5057606
Alignment:
Q  116 aacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||| ||| || || ||||||| |||||||||||    
T  5057557 aacaagagtaccggtacactcaaaattgtgggtgtaccatagaagttccc 5057606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 12105212 - 12105155
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcccaaaat 170  Q
    |||| |||||||||||||||||   | ||| |||||||||||||||||||||| ||||    
T  12105212 tgaagcaagagtaccggtacacctcattttgtgagtgtaccgtagaagttccctaaat 12105155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 14191248 - 14191301
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||| |||||||| ||| || |||||||||  |||||||||||    
T  14191248 gtgaaacaagagtacgggtacactcaaaattatgagtgtactatagaagttccc 14191301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 41321359 - 41321412
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||  |||||| ||| || |||||||||| |||||||||||    
T  41321359 gtgaaacaagagtaccaatacactcaaaattgtgagtgtaccatagaagttccc 41321412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 52273772 - 52273719
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||| |||| ||||||||| ||| || |||||||||| |||||||||||    
T  52273772 gtgaaacaaaagtaacggtacactcaaaattgtgagtgtaccatagaagttccc 52273719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 23539990 - 23539942
Alignment:
Q  118 caagagtaccggtacactaaaatttctgag-tgtaccgtagaagttccc 165  Q
    |||||||||||||||||   |||||||||| ||||||||||||||||||    
T  23539990 caagagtaccggtacacctcaatttctgaggtgtaccgtagaagttccc 23539942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 3053153 - 3053206
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  3053153 gtgaaacaagagtatcggtacactaaaatttctgagtataccgtagaagttccc 3053206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 29039666 - 29039619
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaa 159  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||    
T  29039666 gtgaaacaagagtatcggtacactaaaatttctgagtgtaccatagaa 29039619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 36835696 - 36835750
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    |||||||||||||||||||||||| ||| || |||||||||| ||||||||||||    
T  36835696 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccca 36835750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 38803791 - 38803841
Alignment:
Q  115 aaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||||||| | |||||||| |||||||||||    
T  38803791 aaacaagagtaccggtacactaaaatttataagtgtaccatagaagttccc 38803841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 43182777 - 43182724
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  43182777 gtgaaacaagagtaccggtacacttaaaattgtgagtgtaccatagaagttccc 43182724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 28896957 - 28896905
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  28896957 tgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccc 28896905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 35037817 - 35037869
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcc 164  Q
    |||||||||||||||||||||||| ||| || |||||||||| ||||||||||    
T  35037817 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttcc 35037869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 38627341 - 38627393
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcc 164  Q
    |||||||||||||||||||||||| ||| || |||||||||| ||||||||||    
T  38627341 gtgaaacaagagtaccggtacacttaaaattgtgagtgtaccatagaagttcc 38627393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 41571772 - 41571717
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcccaa 167  Q
    |||||||||||||| || ||||||| ||||||||||||||| |||||| |||||||    
T  41571772 gtgaaacaagagtatcgatacactacaatttctgagtgtacggtagaaattcccaa 41571717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 196119 - 196065
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    |||||||||||||||||| ||||| ||| || |||||||||| ||||||||||||    
T  196119 gtgaaacaagagtaccggcacactcaaaattgtgagtgtaccatagaagttccca 196065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 310956 - 310902
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    |||||||||||||||||| ||||| ||| || |||||||||| ||||||||||||    
T  310956 gtgaaacaagagtaccggcacactcaaaattgtgagtgtaccatagaagttccca 310902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 18844212 - 18844158
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    |||||||||||||| | ||| |||||||||| | |||||||||||||||||||||    
T  18844212 gtgaaacaagagtatcagtatactaaaatttgtaagtgtaccgtagaagttccca 18844158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 7223840 - 7223888
Alignment:
Q  115 aaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttc 163  Q
    ||||||||||||||||||||| ||| || |||||||||| |||||||||    
T  7223840 aaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 7223888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 38971818 - 38971870
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcc 164  Q
    |||||||||||||||||||||||| ||| || |||||||||  ||||||||||    
T  38971818 gtgaaacaagagtaccggtacactcaaaattgtgagtgtactatagaagttcc 38971870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 39002916 - 39002968
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcc 164  Q
    |||||||||||||||||||||||| ||| || |||||||||  ||||||||||    
T  39002916 gtgaaacaagagtaccggtacactcaaaattgtgagtgtactatagaagttcc 39002968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 14913894 - 14913844
Alignment:
Q  115 aaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||||||| ||| || ||||||| || |||||||||||    
T  14913894 aaacaagagtaccggtacactcaaaattgtgagtgtgccatagaagttccc 14913844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 21835784 - 21835838
Alignment:
Q  112 gtgaaacaagagtaccggtacact-aaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||| |||||||| |||| || |||||||||| |||||||||||    
T  21835784 gtgaaacaagagtactggtacactcaaaaattgtgagtgtaccatagaagttccc 21835838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 464604 - 464661
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcccaaaa 169  Q
    ||||||||||| |||||||||||| ||| || ||| |||||| ||||||||| |||||    
T  464604 gtgaaacaagaataccggtacactcaaaattgtgaatgtaccatagaagttctcaaaa 464661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 29265641 - 29265588
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    ||||||||||||||||||||||   | ||| ||||||||| |||||||||||||    
T  29265641 tgaaacaagagtaccggtacacctcactttgtgagtgtacagtagaagttccca 29265588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 31893697 - 31893733
Alignment:
Q  123 gtaccggtacactaaaatttctgagtgtaccgtagaa 159  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  31893697 gtaccggtacacttaaatttttgagtgtaccgtagaa 31893733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 44068369 - 44068426
Alignment:
Q  115 aaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcccaaaattt 172  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||    
T  44068369 aaacaagagtatcgatacactaaaatttctgagtgtaccgtagaagttccctaaattt 44068426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 3723993 - 3723939
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcccaa 167  Q
    ||||||||||||||||||||||| ||| || |||||||||| |||||||||||||    
T  3723993 tgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttcccaa 3723939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 21425563 - 21425616
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||| |||||||||||||||||| | ||||||||| ||||||||    
T  21425563 gtgaaacaagagtatcggtacactaaaatttctaattgtaccgtaaaagttccc 21425616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 37725905 - 37725958
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  37725905 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccc 37725958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 2316890 - 2316838
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  2316890 tgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccc 2316838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 28394422 - 28394474
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcc 164  Q
    |||||||||||||||||||||||| ||| || |||||||||| ||||||||||    
T  28394422 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttcc 28394474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 35292866 - 35292918
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  35292866 tgaaacaagagtaccggtacacttaaaattgtgagtgtaccatagaagttccc 35292918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 40533606 - 40533658
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  40533606 tgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccc 40533658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 45555736 - 45555786
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagtt 162  Q
    |||||| ||||||||||||||||| ||| || |||||||||||||||||||    
T  45555736 gtgaaataagagtaccggtacactcaaagttgtgagtgtaccgtagaagtt 45555786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 5084892 - 5084839
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||||  |||||||||||    
T  5084892 gtgaaacaagagtaccggtacactcaaaattatgagtgtacgatagaagttccc 5084839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 16814904 - 16814851
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||| | |||||||||||    
T  16814904 gtgaaacaagagtaccggtacactcaaaattgtgagtgtatcatagaagttccc 16814851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 16854184 - 16854131
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||| | |||||||||||    
T  16854184 gtgaaacaagagtaccggtacactcaaaattgtgagtgtatcatagaagttccc 16854131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 18576353 - 18576300
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||||| || ||||||||    
T  18576353 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccataaaagttccc 18576300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 36947535 - 36947482
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||||| ||||| |||||    
T  36947535 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaaattccc 36947482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 18009008 - 18008956
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcc 164  Q
    |||||||||||||||||||||||| ||| || | |||||||| ||||||||||    
T  18009008 gtgaaacaagagtaccggtacactcaaaattgtaagtgtaccatagaagttcc 18008956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 21836639 - 21836690
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttc 163  Q
    |||||||||||| ||||||||||| ||| || |||||||||| |||||||||    
T  21836639 gtgaaacaagagcaccggtacactcaaaattgtgagtgtaccatagaagttc 21836690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 36049514 - 36049463
Alignment:
Q  115 aaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    ||||||||||||||||||||| ||| || ||| |||||| ||||||||||||    
T  36049514 aaacaagagtaccggtacactcaaaattgtgaatgtaccatagaagttccca 36049463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 13568262 - 13568212
Alignment:
Q  115 aaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||| |||||||||||||| ||| || |||||||||| |||||||||||    
T  13568262 aaacaacagtaccggtacactcaaaattgtgagtgtaccatagaagttccc 13568212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 6657803 - 6657852
Alignment:
Q  116 aacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||| ||| || || ||||||| |||||||||||    
T  6657803 aacaagagtaccggtacactcaaaattatgggtgtaccatagaagttccc 6657852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 7504071 - 7504022
Alignment:
Q  116 aacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||| ||| || || ||||||| |||||||||||    
T  7504071 aacaagagtaccggtacactcaaaattgtgggtgtaccatagaagttccc 7504022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 10711630 - 10711683
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||| | ||| || |||||||||  |||||||||||    
T  10711630 gtgaaacaagagtaccggtacattcaaaattgtgagtgtacaatagaagttccc 10711683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 19635989 - 19636042
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||| |||| ||||||||| ||| || |||||||||| |||||||||||    
T  19635989 gtgaaacaaaagtatcggtacactcaaaattgtgagtgtaccatagaagttccc 19636042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 19834582 - 19834635
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||| |||| ||||||||| ||| || |||||||||| |||||||||||    
T  19834582 gtgaaacaaaagtatcggtacactcaaaattgtgagtgtaccatagaagttccc 19834635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 34969786 - 34969842
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcccaaa 168  Q
    |||||||||||||||||||||||| ||| || |||||||||| ||||||||||||||    
T  34969786 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttcccaaa 34969842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 18871278 - 18871332
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcccaa 167  Q
    ||||| ||||||||||||||||| ||| || |||||||||| |||||||||||||    
T  18871278 tgaaaaaagagtaccggtacactcaaaattgtgagtgtaccatagaagttcccaa 18871332  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 21970667 - 21970713
Alignment:
Q  119 aagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||| | ||||| ||||||||||||||||||||||    
T  21970667 aagagtaccggtacaccagaatttatgagtgtaccgtagaagttccc 21970713  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 29638787 - 29638733
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    ||||||||||||||| |||||||| ||| || |||||||||| ||||||||||||    
T  29638787 gtgaaacaagagtactggtacactcaaaattgtgagtgtaccatagaagttccca 29638733  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 35224882 - 35224829
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||| |||||||||||||| ||| || |||||||||| |||||||||||    
T  35224882 gtgaaacaatagtaccggtacactcaaaattgtgagtgtaccatagaagttccc 35224829  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 1339209 - 1339261
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||| ||||||||||||||||| ||| || |||||||||| |||||||||||    
T  1339209 tgaaaaaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccc 1339261  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 24025792 - 24025841
Alignment:
Q  116 aacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||| ||| || || ||||||||| |||||||||    
T  24025792 aacaagagtaccggtacactcaaaattgtgggtgtaccgttgaagttccc 24025841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 18667733 - 18667689
Alignment:
Q  119 aagagtaccggtacactaaaatttctgagtgtaccgtagaagttc 163  Q
    |||||||||||||||| | |||||  |||||||||||||||||||    
T  18667733 aagagtaccggtacaccacaatttacgagtgtaccgtagaagttc 18667689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 19474025 - 19474081
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgag-tgtaccgtagaagttcccaaa 168  Q
    |||| |||||||||||||||||   ||||| |||| |||||||||||||||||||||    
T  19474025 tgaagcaagagtaccggtacacctcaatttgtgaggtgtaccgtagaagttcccaaa 19474081  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 29023671 - 29023619
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||| |||||||||||||||||   |||||  |||||||||||||||||||||    
T  29023671 tgaagcaagagtaccggtacacctcaatttacgagtgtaccgtagaagttccc 29023619  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 33574707 - 33574759
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||| |||||||||||||||||   | ||| ||||||||||||||||||||||    
T  33574707 tgaagcaagagtaccggtacacctcactttgtgagtgtaccgtagaagttccc 33574759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 33574885 - 33574937
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||| |||||||||||||||||   | ||| ||||||||||||||||||||||    
T  33574885 tgaagcaagagtaccggtacacctcactttgtgagtgtaccgtagaagttccc 33574937  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 56017143 - 56017187
Alignment:
Q  115 aaacaagagtaccggtacactaaaatttctgagtgtaccgtagaa 159  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  56017143 aaacaagagtaccggtacactaaaatttgtgagtgtaccgtagaa 56017187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 27636098 - 27636144
Alignment:
Q  116 aacaagagtaccggtacactaaaatttctgagtgtaccgtagaagtt 162  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||    
T  27636098 aacaagagtaccggtacactaaaatatatgagtgtaccgtagaagtt 27636144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 42244587 - 42244533
Alignment:
Q  115 aaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcccaaaa 169  Q
    ||||||||||||||||||||| ||| || |||||||||| |||||||||||||||    
T  42244587 aaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttcccaaaa 42244533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 44998764 - 44998818
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    |||||||||||||||||||||||| ||| || |||||||||| ||||||||||||    
T  44998764 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccca 44998818  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 2526525 - 2526578
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  2526525 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccc 2526578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 10779044 - 10778991
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  10779044 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccc 10778991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 38955094 - 38955037
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcccaaaat 170  Q
    ||||||||||||||||||||||| ||| || |||||||||| ||||||||||| ||||    
T  38955094 tgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccctaaat 38955037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 54505627 - 54505566
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcccaaaatttt 173  Q
    ||||||||||| ||| ||||||||| ||||||||||||||| ||| |||||||||| |||||    
T  54505627 gtgaaacaagaatactggtacactacaatttctgagtgtacggtaaaagttcccaatatttt 54505566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 24292332 - 24292383
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttc 163  Q
    |||||||||||||||||||||||| ||| || |||||||||| |||||||||    
T  24292332 gtgaaacaagagtaccggtacacttaaaattgtgagtgtaccatagaagttc 24292383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 36570002 - 36570056
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    ||||||||||||||| |||||||| ||| || |||||||||| ||||||||||||    
T  36570002 gtgaaacaagagtactggtacactcaaaattgtgagtgtaccatagaagttccca 36570056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 46630698 - 46630648
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagtt 162  Q
    |||||||||||||||||||||||| ||| || |||||||||| ||||||||    
T  46630698 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagtt 46630648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 16004585 - 16004532
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    ||||| ||||||||||||||||| ||| || |||||||||| ||||||||||||    
T  16004585 tgaaataagagtaccggtacactcaaaattgtgagtgtaccatagaagttccca 16004532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 27967864 - 27967917
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||| |||||||| ||| || |||||||||| |||||||||||    
T  27967864 gtgaaacaagagtactggtacactcaaaattgtgagtgtaccatagaagttccc 27967917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 21515344 - 21515395
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcc 164  Q
    ||||||||||||||||||||||| ||| || |||||||| | ||||||||||    
T  21515344 tgaaacaagagtaccggtacactcaaaattgtgagtgtatcatagaagttcc 21515395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 29582329 - 29582376
Alignment:
Q  122 agtaccggtacactaaaatttctgagtgtaccgtagaagttcccaaaa 169  Q
    |||||||||||||   ||||| ||||||||||||||||||||||||||    
T  29582329 agtaccggtacacctcaatttgtgagtgtaccgtagaagttcccaaaa 29582376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 42080377 - 42080330
Alignment:
Q  115 aaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagtt 162  Q
    ||||||||||||||||| |||||||||||| | |||| ||||||||||    
T  42080377 aaacaagagtaccggtatactaaaatttctaaatgtatcgtagaagtt 42080330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 46663680 - 46663735
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttcccaaa 168  Q
    |||| |||||||||||||||||   |||||  ||||||||||||||||||||||||    
T  46663680 tgaagcaagagtaccggtacacctcaatttacgagtgtaccgtagaagttcccaaa 46663735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 54499928 - 54499982
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    |||||||||||||||||||||||| ||| || ||| |||||  ||||||||||||    
T  54499928 gtgaaacaagagtaccggtacactcaaaattatgaatgtacgatagaagttccca 54499982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 55129818 - 55129772
Alignment:
Q  116 aacaagagtaccggtacactaaaatttctgagtgtaccgtagaagtt 162  Q
    ||||| ||||||||||||||||||| | |||||||| ||||||||||    
T  55129818 aacaaaagtaccggtacactaaaatatgtgagtgtatcgtagaagtt 55129772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 1857166 - 1857215
Alignment:
Q  121 gagtaccggtacactaaaatttctgagtgtaccgtagaagttcccaaaat 170  Q
    ||||||||||||||   | ||| |||||||||||||||||||||||||||    
T  1857166 gagtaccggtacacctcattttgtgagtgtaccgtagaagttcccaaaat 1857215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 33612881 - 33612930
Alignment:
Q  116 aacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||| ||| || || ||||||| |||||||||||    
T  33612881 aacaagagtaccggtacactcaaaattgtgggtgtaccatagaagttccc 33612930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0493 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 1741 - 1795
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccca 166  Q
    |||||||||||||||||||||||| ||| || |||||||||| ||||||||||||    
T  1741 gtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccca 1795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 15736 - 15788
Alignment:
Q  113 tgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    ||||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  15736 tgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttccc 15788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 166472 - 166419
Alignment:
Q  112 gtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttccc 165  Q
    |||||||||||||||||||||||| ||| || ||| |||||| || ||||||||    
T  166472 gtgaaacaagagtaccggtacactcaaaattgtgaatgtaccatataagttccc 166419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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