View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3185_high_18 (Length: 262)
Name: NF3185_high_18
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3185_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 33785633 - 33785407
Alignment:
| Q |
13 |
agaacctgtgatatattctggtagcatacgtgacaatattttgtttggaaaacaagatgcaagtgaaaatgaagttgttgaggctgctaggtctgcaaat |
112 |
Q |
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| T |
33785633 |
agaacctgtgatatattctggtagcatacgtgacaatattttgtttggaaaacaagatgcaagtgaaaatgaagttgttgaggctgctaggtctgcaaat |
33785534 |
T |
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| Q |
113 |
gctcatgacttcatatcgtaagtttcctctttatgca-nnnnnnnnnattatcaagaatcgaactcggtatcctagagtttacaacactcacacactgcg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33785533 |
gctcatgacttcatatcgtaagtttcctctttatgcattttttttttattatcaagaatcgaactcggtatcctagagtttacaacactcacacactgcg |
33785434 |
T |
|
| Q |
212 |
taccgatcacttgcgtttgaacctgata |
239 |
Q |
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|| ||||||||||||||||||||||||| |
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| T |
33785433 |
ta-cgatcacttgcgtttgaacctgata |
33785407 |
T |
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