View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3185_high_2 (Length: 661)
Name: NF3185_high_2
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3185_high_2 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] scaffold0536 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 538
Target Start/End: Original strand, 3416731 - 3417257
Alignment:
| Q |
18 |
gccttcacaccgtcgacttcccctttcaacaaatggacctccctgaaggcattgaatctatatcctccaccactgaccttgtcaccacttggaagatcaa |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
3416731 |
gccttcacaccgtcgactttccctttcaacaaatggacctccctgaaggcattgaatctatatcctccaccaccgacctcgtcaccacttggaagatcaa |
3416830 |
T |
|
| Q |
118 |
caatggcgcaatgctcctccatcgacccattgaggatttcattaaaaacgatccaccagattgtatcatctccgactctgcatacccatgggttaatgac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3416831 |
caatggcgcaatgctcctccatcgacccattgaggatttcattaaaaacgatccaccagattgtatcatctccgactctgcatacccatgggttaatgac |
3416930 |
T |
|
| Q |
218 |
ttagcccagagccttcaaatccctaatttcacatacaatgttttgtctgtctttccagtcttgctcatggaatcgcttagaacaaataatttacttttta |
317 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3416931 |
ttggcccagaagcttcaaatccctaatttcacatacaatgttttgtccgtttttccagtcttgctcatggaatcccttagaacaaataatttacttttta |
3417030 |
T |
|
| Q |
318 |
cggattct------gattcaagttcctatgtcgttccaaactttcctcttcctatcaccatgtgcagtaaaccaccaaaggttctcagtaaattcatagg |
411 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3417031 |
cggattctgattcggattcaagttcctatatcgttccaaactttcctcttcctatcaccatgtgcagtaaaccaccaaaggttctcagtaaattcatagg |
3417130 |
T |
|
| Q |
412 |
actgatgcttgacacagtgttcaaaagtaatggcttcatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgca |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3417131 |
actgatgcttgacacagtgttcaaaagtaatggctttatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgta |
3417230 |
T |
|
| Q |
512 |
ggtcacaaggcttggcatcttggtcca |
538 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
3417231 |
ggtcacaaggcttggcatcttggtcca |
3417257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 3e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 19 - 551
Target Start/End: Complemental strand, 12541668 - 12541124
Alignment:
| Q |
19 |
ccttcacaccgtcgacttcccctttcaacaaatggacctccctgaaggcattgaatctatatcctccaccactgaccttgtcaccacttggaagatcaac |
118 |
Q |
| |
|
||||||||| ||||||||||||| ||||| | ||||||||| |||||||||||||||| |||||||||||||||| | ||| ||||||| || || |
|
|
| T |
12541668 |
ccttcacactgtcgacttcccctccgaacaagtcgacctccctaaaggcattgaatctatgtcctccaccactgaccccattacctcttggaaaattcac |
12541569 |
T |
|
| Q |
119 |
aatggcgcaatgctcctccatcgacccattgaggatttcattaaaaacgatccaccagattgtatcatctccgactctgcatacccatgggttaatgact |
218 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| ||||| || || ||||||| ||||||||||| |||||||| | ||| |||||| |||||||| |
|
|
| T |
12541568 |
aatggtgcaatgctcctccatggacccattgatgattttgttgtgaataatccacctgattgtatcattgccgactcttcttactcatggggtaatgact |
12541469 |
T |
|
| Q |
219 |
tagcccagagccttcaaatccctaatttcacatacaatgttttgtctgtctttccagtcttgctcatggaatcgcttagaacaaataatttactttttac |
318 |
Q |
| |
|
| || | | || ||| | || |||||||||| ||||| | ||| | ||| | |||| ||||||||||| ||||||| ||| ||||| ||| ||| |
|
|
| T |
12541468 |
tggctcgtaagctacaagtacccaatttcacattcaatggatcctctctttttgctgtctccctcatggaatcccttagaaaaaacaatttgcttcatac |
12541369 |
T |
|
| Q |
319 |
ggattctgattc------------aagttcctatgtcgttccaaactttcctcttcctatcaccatgtgcagtaaaccaccaaaggttctcagtaaattc |
406 |
Q |
| |
|
|||||||||| |||||| |||||||||||||| ||||||| || ||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
12541368 |
caattctgattctgattcggattcaagttcgtatgtcgttccaaattttcctcatcgtatcaccatgtgcagtaaaccgtcaaaggttctcagcaaattc |
12541269 |
T |
|
| Q |
407 |
ataggactgatgcttgacacagtgttcaaaagtaatggcttcatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaa |
506 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||| ||| |||||||||| ||||||||||||||||||||||| | |||||||| ||||||| |
|
|
| T |
12541268 |
ataggattgatgcttgacacagtgttcaaaagtacaggctacattatcaacaactttgttgaacttgatggagaagagtgtgtccaacactacgagaaaa |
12541169 |
T |
|
| Q |
507 |
ccgcaggtcacaaggcttggcatcttggtccagcttgtcttattc |
551 |
Q |
| |
|
|| | ||||||||||||||||||||||||||| ||| | |||||| |
|
|
| T |
12541168 |
ccacgggtcacaaggcttggcatcttggtccaacttcttttattc |
12541124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 18 - 578
Target Start/End: Complemental strand, 28386321 - 28385746
Alignment:
| Q |
18 |
gccttcacaccgtcgacttcccctttcaacaaatggacctccctgaaggcattgaatctatatcctccaccactgaccttgtcaccacttggaagatcaa |
117 |
Q |
| |
|
||||||||||||| || ||||||| ||||||| | ||||||||| ||||| |||| ||||| ||||||||||||||| | ||||||||||||||||| | |
|
|
| T |
28386321 |
gccttcacaccgttgaattcccctatcaacaagtcgacctccctaaaggcgttgagtctatgacctccaccactgaccctatcaccacttggaagatcca |
28386222 |
T |
|
| Q |
118 |
caatggcgcaatgctcctccatcgacccattgaggatttcattaaaaacgatccaccagattgtatcatctccgactctgcatacccatgggttaatgac |
217 |
Q |
| |
|
|||||||||||||||||| || | | ||| ||||||| || | || ||||||| |||||||| || | ||||| |||| | |||||| ||||||| |
|
|
| T |
28386221 |
taatggcgcaatgctcctcaatgaagcggttggggatttcgttgagaagaatccaccggattgtattattgctgactccgcattctcatgggctaatgac |
28386122 |
T |
|
| Q |
218 |
ttagcccagagccttcaaatccctaatttcacatacaatgttttgtctgtctttccagtcttgctcatggaatcgcttagaacaaataatttacttttta |
317 |
Q |
| |
|
|| ||||| | ||||||||||| ||| | || | |||| | |||| ||||| | |||| | || | | || ||| ||||||| ||||||||| || |
|
|
| T |
28386121 |
ttggcccacaagcttcaaatcccgaatctaacgtttaatggatcgtctctctttgctgtctcgatctttcattctcttcgaacaaacaatttacttcata |
28386022 |
T |
|
| Q |
318 |
cggattctgat------------tcaagttcctatgtcgttccaaactttcctcttccta---tcaccatgtgcagtaaaccaccaaaggttctcagtaa |
402 |
Q |
| |
|
| ||| ||||| |||||||| |||||||||||||| ||| || | || | ||| |||| ||||||||||||||||||||||| | |
|
|
| T |
28386021 |
cagatgctgatgctgattcagattcaagttcatatgtcgttccaaatcttcatcatgataatattaccttgtgtagtaaaccaccaaaggttctcagcat |
28385922 |
T |
|
| Q |
403 |
attcataggactgatgcttgacacagtgttcaaaagtaatggcttcatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgag |
502 |
Q |
| |
|
||||||||| ||||||||||||| ||| ||||||||| |||| |||| |||||||||| ||||||||||||||||||||||| | ||||||| ||| |
|
|
| T |
28385921 |
gttcataggaatgatgcttgacacggtgctcaaaagtacaggctacatcatcaacaactttgttgaacttgatggagaagagtgtgtcaaacactacgag |
28385822 |
T |
|
| Q |
503 |
aaaaccgcaggtcacaaggcttggcatcttggtccagcttgtcttattcgcgaatctgttcaagagaaagctgaga |
578 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||| ||| ||||||| || |||||||||||||||| |||| |
|
|
| T |
28385821 |
aaaaccacgggtcacaaggcttggcatcttggtccaacttcctttattcgtaaaactgttcaagagaaagcagaga |
28385746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 23 - 631
Target Start/End: Complemental strand, 13441179 - 13440559
Alignment:
| Q |
23 |
cacaccgtcgacttcccctttcaacaaatggacctccctgaaggcattgaatctatatcctccaccactgaccttgtcaccacttggaagatcaacaatg |
122 |
Q |
| |
|
|||||||||||||| |||| |||||| | |||||||||||||||||||||||||| || |||||||||||| | | ||| ||||||||||| || || |
|
|
| T |
13441179 |
cacaccgtcgactttccctcccaacaagtcgacctccctgaaggcattgaatctatgtcttccaccactgactctatgacctcttggaagatccaccgtg |
13441080 |
T |
|
| Q |
123 |
gcgcaatgctcctccatcgacccattgaggatttcattaaaaacgatccaccagattgtatcatctccgactctgcatacccatgggttaatgacttagc |
222 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||| | || ||||||||||||||||||||||||||||| ||||||||||||| ||||||||| || |
|
|
| T |
13441079 |
gcgcaatgctcctccatggatccattgaggatttcatggagaaagatccaccagattgtatcatctccgactccgcatacccatgggctaatgacttggc |
13440980 |
T |
|
| Q |
223 |
ccagagccttcaaatccctaatttcacatacaatgttttgtctgtctttccagtcttgctcatggaatcgcttagaacaaataatttactt--tt----t |
316 |
Q |
| |
|
|| | ||||| ||||| || |||||| ||||| ||||| | ||| | |||| ||| ||||||| || | |||| || |||||| || | |
|
|
| T |
13440979 |
gcataagcttcagatcccaaacctcacattcaatggattgtcactttttaccgtctctctcgtggaatccctccaagcaaacaacttacttcattctgat |
13440880 |
T |
|
| Q |
317 |
acggattct------gattcaagttcctatgtcgttccaaactttcctcttcctatcaccatgtgcagtaaaccaccaaaggttctcagtaaattcatag |
410 |
Q |
| |
|
|| ||||| ||||||||||||| ||| |||||||| ||||||| || ||| ||| ||||| | ||||| |||||||| | || |||||| || |
|
|
| T |
13440879 |
actaattctgatttggattcaagttcctttgttgttccaaattttcctcatcgtataaccttgtgcggaaaaccgccaaaggtaattagcaaattcctaa |
13440780 |
T |
|
| Q |
411 |
gactgatgcttgacacagtgttcaaaagtaatggcttcatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgc |
510 |
Q |
| |
|
| ||||||||| |||||| |||||||||| | ||||| |||||||||||| ||||||||| ||||||||||| || |||||||||||||||||| | |
|
|
| T |
13440779 |
aaatgatgcttgggacagtgctcaaaagtaaagcactcatcatcaacaacttcactgaacttgacggagaagagtgcatccaacactatgagaaaaccac |
13440680 |
T |
|
| Q |
511 |
aggtcacaaggcttggcatcttggtccagcttgtcttattcgcgaatctgttcaagagaaagctgagagggggaatgagagtgtggttagcatgcatgaa |
610 |
Q |
| |
|
|||||||||| ||||||||| |||||| ||| ||||||||| || | ||||||||||||| |||||||| || ||| ||| || | |||||| ||| |
|
|
| T |
13440679 |
gggtcacaaggtttggcatctcggtccaacttctcttattcgtaaaaccattcaagagaaagcagagaggggaaaggagggtgatgtgaacatgcacgaa |
13440580 |
T |
|
| Q |
611 |
tgtctaagttggctcaactca |
631 |
Q |
| |
|
|| | ||||||||| ||||| |
|
|
| T |
13440579 |
tgcatgagttggctcgactca |
13440559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 20 - 589
Target Start/End: Complemental strand, 13449345 - 13448764
Alignment:
| Q |
20 |
cttcacaccgtcgacttcccctttcaacaaatggacctccctgaaggcattgaatctatatcctccaccactgaccttgtcaccacttggaagatcaaca |
119 |
Q |
| |
|
||||||||||| |||||||||| |||||| | | |||||||||||| ||||||||||| || || || || |||| |||||||||||||||| | | |
|
|
| T |
13449345 |
cttcacaccgttgacttcccctcccaacaagtcggcctccctgaaggtattgaatctatgtcttcaactacggaccccaccaccacttggaagatccata |
13449246 |
T |
|
| Q |
120 |
atggcgcaatgctcctccatcgacccattgaggatttcattaaaaacgatccaccagattgtatcatctccgactctgcatacccatgggttaatgactt |
219 |
Q |
| |
|
|||||| |||||||| | ||| |||| |||||||||| | || |||||||| |||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
13449245 |
ctggcgcgatgctccttaaagaacctattggggatttcattgagaatgatccaccggattgtatcatctccgactccacgtacccatgggttaatgactt |
13449146 |
T |
|
| Q |
220 |
agcccagagccttcaaatccctaatttcacatacaatgttttgtctgtctttccagtcttgctcatggaatcgcttagaacaaataatttactt---ttt |
316 |
Q |
| |
|
||| | | |||| ||||| || |||||| ||||| |||| | ||| | |||| ||| ||||| | || | |||||| ||||||||| | | |
|
|
| T |
13449145 |
ggccgataagtttcagatcccaaacatcacattcaatggattgtgcctttttgctgtctccctcgtggaaaccctcaaaacaaacaatttacttaagtct |
13449046 |
T |
|
| Q |
317 |
---acggattct------gattcaagttcctatgtcgttccaaactttcctcttcctatcaccatgtgcagtaaaccaccaaaggttctcagtaaattca |
407 |
Q |
| |
|
|| |||||| ||||||||||||| ||| |||||||| ||||||| | ||||||| |||| | ||||| |||||||| || ||| ||||| |
|
|
| T |
13449045 |
cagacagattctgattcggattcaagttcctttgttgttccaaattttcctcaccatatcaccttgtgtggaaaaccgccaaaggtaatcggtatattca |
13448946 |
T |
|
| Q |
408 |
taggactgatgcttgacacagtgttcaaaagtaatggcttcatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaac |
507 |
Q |
| |
|
| ||| |||||||||| || ||| | |||||||| | | ||| |||||||||||| ||||||||||||||||||||| || |||||||| |||||| | |
|
|
| T |
13448945 |
tgggaatgatgcttgagacggtgcttaaaagtaaagcactaatcatcaacaacttcagtgaacttgatggagaagagtgcatacaacactacgagaaagc |
13448846 |
T |
|
| Q |
508 |
cgcaggtcacaaggcttggcatcttggtccagcttgtcttattcgcgaatctgttcaagagaaagctgagagggggaatgag |
589 |
Q |
| |
|
| | |||||||||| |||||||||||||||| ||| |||||||||| || ||| |||||||||| | |||||||| |||||| |
|
|
| T |
13448845 |
cacgggtcacaaggtttggcatcttggtccaacttctcttattcgcaaaactgctcaagagaaatcagagaggggaaatgag |
13448764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 453 - 550
Target Start/End: Complemental strand, 13455371 - 13455274
Alignment:
| Q |
453 |
tcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttggcatcttggtccagcttgtcttatt |
550 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| || |||||||| || ||||| |||||||||||| ||||||| |||||||| ||| ||||||| |
|
|
| T |
13455371 |
tcaacaacttcagtgaatttgatggagaagagtgcatccaacactacgaaaaaacaacaggtcacaaggtttggcatattggtccaacttctcttatt |
13455274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 13455669 - 13455611
Alignment:
| Q |
167 |
gatccaccagattgtatcatctccgactctgcatacccatgggttaatgacttagccca |
225 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
13455669 |
gatcccccagattgtatcatctccgacgctgcatacccatgggttaatgacttggccca |
13455611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 13462365 - 13462227
Alignment:
| Q |
21 |
ttcacaccgtcgacttcccctttcaacaaatggacctccctgaaggcattgaatctatatcctccaccactgaccttgtcaccacttggaagatcaacaa |
120 |
Q |
| |
|
|||||||| |||| ||||||| |||||| | | ||| ||||| |||||||||||||| || |||||||| ||| ||| ||||||||||| | | |
|
|
| T |
13462365 |
ttcacaccatcgaattcccctcccaacaagttggccttcctgatggcattgaatctatgtcttccaccaccgactccaccacatcttggaagatccatca |
13462266 |
T |
|
| Q |
121 |
tggcgcaatgctcctccatcgacccattgaggatttcat |
159 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13462265 |
tggcgcaatgctcctccatggacccattgaggatttcat |
13462227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 1e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 432 - 660
Target Start/End: Original strand, 12589787 - 12590015
Alignment:
| Q |
432 |
tcaaaagtaatggcttcatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttggcatct |
531 |
Q |
| |
|
||||||||||||| |||| || ||||||||| |||||||||||| |||||||| | ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12589787 |
tcaaaagtaatggactcattgttaacaacttcgctgaacttgatggccaagagtgtgtcaaacactatgagaaaaccacaggtcacaaggcttggcatct |
12589886 |
T |
|
| Q |
532 |
tggtccagcttgtcttattcgcgaatctgttcaagagaaagctgagagggggaatgagagtgtggttagcatgcatgaatgtctaagttggctcaactca |
631 |
Q |
| |
|
||||||||||| |||||||| | || |||||||||||||||| || ||||| ||||||||||| || | | |||| || ||||| |||||||| ||||| |
|
|
| T |
12589887 |
tggtccagcttctcttattcacaaaactgttcaagagaaagcagataggggaaatgagagtgttgtgaacgtgcaagagtgtctgagttggctaaactcg |
12589986 |
T |
|
| Q |
632 |
aaacgagataattcaatgttgtacatatg |
660 |
Q |
| |
|
|| |||||||| || ||||||||||||| |
|
|
| T |
12589987 |
aagcgagataactctgtgttgtacatatg |
12590015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 344 - 660
Target Start/End: Original strand, 12482994 - 12483310
Alignment:
| Q |
344 |
gttccaaactttcctcttcctatcaccatgtgcagtaaaccaccaaaggttctcagtaaattcataggactgatgcttgacacagtgttcaaaagtaatg |
443 |
Q |
| |
|
|||||||| ||||||| | ||||||| |||||| |||||||||||| | ||| | |||| ||| | |||||||||| ||| | |||||||||| |
|
|
| T |
12482994 |
gttccaaattttcctcaccatatcaccttgtgcacaaaaccaccaaagatgttcacaatattcctagaaatgatgcttgaaacaatacacaaaagtaata |
12483093 |
T |
|
| Q |
444 |
gcttcatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttggcatcttggtccagcttg |
543 |
Q |
| |
|
| |||||||||| | ||||| |||||| ||||| |||| || | ||||||| || |||| | |||||||||||||||||| | |||||| || |
|
|
| T |
12483094 |
gactcatcgtcaatagcttcactgaactggatggcaaagaatgcgtcgaacactacgaaaaaatcatgggtcacaaggcttggcatttaggtccacattc |
12483193 |
T |
|
| Q |
544 |
tcttattcgcgaatctgttcaagagaaagctgagagggggaatgagagtgtggttagcatgcatgaatgtctaagttggctcaactcaaaacgagataat |
643 |
Q |
| |
|
|||||| | ||| |||||||||| || || |||||||| || |||||||| || ||| ||||||| |||| ||||||||| |||||||| | ||| ||| |
|
|
| T |
12483194 |
acttatttgtgaaactgttcaagaaaaggcagagaggggaaacgagagtgttgtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaat |
12483293 |
T |
|
| Q |
644 |
tcaatgttgtacatatg |
660 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
12483294 |
tcagtgttgtacatatg |
12483310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 455 - 661
Target Start/End: Original strand, 12641122 - 12641328
Alignment:
| Q |
455 |
aacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttggcatcttggtccagcttgtcttattcgcg |
554 |
Q |
| |
|
|||||||| ||||||||||||| ||||| || || ||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12641122 |
aacaactttgttgaacttgatggtgaagattgcatcaaacactatgagaaaaccatgggttacaaggcttggcatcttggtccaacttgtcttattcgca |
12641221 |
T |
|
| Q |
555 |
aatctgttcaagagaaagctgagagggggaatgagagtgtggttagcatgcatgaatgtctaagttggctcaactcaaaacgagataattcaatgttgta |
654 |
Q |
| |
|
|| || || |||||||| || |||||| |||||||||||||||||| |||| | |||||| |||||||||| ||||| | |||||||||| |||| || |
|
|
| T |
12641222 |
aaacttttgaagagaaatctatgaggggcaatgagagtgtggttagcgcgcataagtgtctaggttggctcaattcaaagcaagataattcagtgttata |
12641321 |
T |
|
| Q |
655 |
catatgt |
661 |
Q |
| |
|
||||||| |
|
|
| T |
12641322 |
catatgt |
12641328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 6e-39; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 414 - 660
Target Start/End: Complemental strand, 48958723 - 48958477
Alignment:
| Q |
414 |
tgatgcttgacacagtgttcaaaagtaatggcttcatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcagg |
513 |
Q |
| |
|
|||||||||| ||| | |||||||||| || ||||| ||||||||||||||||||||||||| |||||||| || ||||||| |||||| | | || |
|
|
| T |
48958723 |
tgatgcttgagacaatcctcaaaagtaagggactcatcatcaacaacttcattgaacttgatggtgaagagtgcatcgaacactacaagaaaatcacggg |
48958624 |
T |
|
| Q |
514 |
tcacaaggcttggcatcttggtccagcttgtcttattcgcgaatctgttcaagagaaagctgagagggggaatgagagtgtggttagcatgcatgaatgt |
613 |
Q |
| |
|
|||||||| ||||||||||||||| |||| |||||||||| || | ||||||||||| | |||||||| ||||||| ||| ||||| |||||| ||| |
|
|
| T |
48958623 |
tcacaaggtttggcatcttggtcctgcttctcttattcgccaaaccattcaagagaaatcagagaggggaaatgagaatgttgttagtgtgcatggttgt |
48958524 |
T |
|
| Q |
614 |
ctaagttggctcaactcaaaacgagataattcaatgttgtacatatg |
660 |
Q |
| |
|
|| ||||||||||||| || || |||| ||| ||||||||||||| |
|
|
| T |
48958523 |
ctgagttggctcaacttgaagagacataactcagtgttgtacatatg |
48958477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 447 - 594
Target Start/End: Complemental strand, 48962837 - 48962690
Alignment:
| Q |
447 |
tcatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttggcatcttggtccagcttgtct |
546 |
Q |
| |
|
|||| |||||||||||| ||||||||| || |||||||| || ||||||| ||||||||| | |||||||||||||||||||| ||||||| || ||| |
|
|
| T |
48962837 |
tcattgtcaacaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacgggtcacaaggcttggcatctcggtccagtttctct |
48962738 |
T |
|
| Q |
547 |
tattcgcgaatctgttcaagagaaagctgagagggggaatgagagtgt |
594 |
Q |
| |
|
||||||| |||| |||||||||||||| || ||||| |||||||||| |
|
|
| T |
48962737 |
tattcgcaaatccgttcaagagaaagcagaaaggggacatgagagtgt |
48962690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 512 - 658
Target Start/End: Complemental strand, 48965807 - 48965661
Alignment:
| Q |
512 |
ggtcacaaggcttggcatcttggtccagcttgtcttattcgcgaatctgttcaagagaaagctgagagggggaatgagagtgtggttagcatgcatgaat |
611 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||| || |||||||||||||||| |||||||| | ||||||| || ||| |||| || | |
|
|
| T |
48965807 |
ggtcataaggcttggcatcttggtccagcttctcttattcgtaaaactgttcaagagaaagcagagaggggacaagagagtgcagtgagcgtgcaagagt |
48965708 |
T |
|
| Q |
612 |
gtctaagttggctcaactcaaaacgagataattcaatgttgtacata |
658 |
Q |
| |
|
|| | ||||||||||| || || ||| |||| ||| ||||||||||| |
|
|
| T |
48965707 |
gtttgagttggctcaattccaagcgacataactcagtgttgtacata |
48965661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 419 - 660
Target Start/End: Original strand, 48911950 - 48912191
Alignment:
| Q |
419 |
cttgacacagtgttcaaaagtaatggcttcatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcaca |
518 |
Q |
| |
|
||||| ||||| ||||||||||| || || | |||||||| || ||||||||| || ||||||| ||| ||||||| |||||||| | |||||| |
|
|
| T |
48911950 |
cttgagacagttttcaaaagtaacggaatccttgtcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcaca |
48912049 |
T |
|
| Q |
519 |
aggcttggcatcttggtccagcttgtcttattcgcgaatctgttcaagagaaagctgagagggggaatgagagtgtggttagcatgcatgaatgtctaag |
618 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||| | || |||||||||| |||||||| || | |||||||| || || |||| || ||| | || |
|
|
| T |
48912050 |
aagcttggcatcttggtccagcttctcttattcgcagaactattcaagagaaggctgagagaggagaagagagtgttgtgagtgtgcacgagtgtttgag |
48912149 |
T |
|
| Q |
619 |
ttggctcaactcaaaacgagataattcaatgttgtacatatg |
660 |
Q |
| |
|
|||||| ||||| |||| |||||| || || |||||||||| |
|
|
| T |
48912150 |
ttggcttaactcgaaacaagataactcggtggtgtacatatg |
48912191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 48963162 - 48963065
Alignment:
| Q |
122 |
ggcgcaatgctcctccatcgacccattgaggatttcattaaaaacgatccaccagattgtatcatctccgactctgcatacccatgggttaatgactt |
219 |
Q |
| |
|
||||||||||||||||| |||| ||| |||||||||| | || |||||||| || || |||||| |||||| | ||||||||||||| ||||||| |
|
|
| T |
48963162 |
ggcgcaatgctcctccacggaccaattcaggatttcatggagaaggatccacctgactgcatcatcaccgactgtatatacccatgggtttatgactt |
48963065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 447 - 485
Target Start/End: Complemental strand, 48974652 - 48974614
Alignment:
| Q |
447 |
tcatcgtcaacaacttcattgaacttgatggagaagagt |
485 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
48974652 |
tcatcgtcaacaacttcactgagcttgatggagaagagt |
48974614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 466 - 660
Target Start/End: Original strand, 6163 - 6357
Alignment:
| Q |
466 |
tgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttggcatcttggtccagcttgtcttattcgcgaatctgttcaa |
565 |
Q |
| |
|
||||||||| || ||||||| || ||||||| |||||||| |||||||||| ||||||||||||||||| |||| ||||||||| | |||||||| |
|
|
| T |
6163 |
tgaacttgacggtgaagagtacatcgaacactacgagaaaactacaggtcacaaagcttggcatcttggtccggcttctcttattcgtagaactgttcaa |
6262 |
T |
|
| Q |
566 |
gagaaagctgagagggggaatgagagtgtggttagcatgcatgaatgtctaagttggctcaactcaaaacgagataattcaatgttgtacatatg |
660 |
Q |
| |
|
|| ||||| ||||||| | | ||||| || || ||||||| ||||| |||||||| |||| || | |||||| ||| ||||||||||||| |
|
|
| T |
6263 |
gaaaaagcacagaggggacaacaaagtgttgtgagtgtgcatgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatg |
6357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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