View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3185_high_22 (Length: 250)
Name: NF3185_high_22
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3185_high_22 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 43485627 - 43485390
Alignment:
| Q |
13 |
aaaatcaaatagtgattcaattcaatctagctgattatttcccagcaaatactaaggttttagtttcaggttcaattaacgccagcataggatgagtttt |
112 |
Q |
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| T |
43485627 |
aaaatcaaatagtgattcaattcaatctagctgattatttcccagcaaatactaaggttttagtttcatgttcaattaacgccagcataggatgagtttt |
43485528 |
T |
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| Q |
113 |
tgaacaataaagaaaataattggtgtgttacattgacctttcattcccttcaaatacatcaagttcaataaatagaatcctgaatatccaaggtaagaaa |
212 |
Q |
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| T |
43485527 |
tgaacaataaagaaaataattggtgtgttacattgacctttcattcccttcaaatacatcaagttcaataaataaaatcctgaatatccaaggtaagaaa |
43485428 |
T |
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| Q |
213 |
agatttataggaaaggagagatgagctataagtaataa |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
43485427 |
agatttataggaaaggagagatgagctataagtaataa |
43485390 |
T |
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