View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3185_high_24 (Length: 249)
Name: NF3185_high_24
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3185_high_24 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 113 - 249
Target Start/End: Original strand, 15626591 - 15626727
Alignment:
| Q |
113 |
ttttaactccacttctgtacaatttaatttattgtcgatgtatacaaattaaattcatgttttgatcgtatataacaggcgaatcatgcacatgtaaaaa |
212 |
Q |
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| T |
15626591 |
ttttaactccacgtctgtacaatttaatttattgtcgatgtatacaaattaaattcatgttttgatcgtatataacaggcgaatcatgcacatgtaaaaa |
15626690 |
T |
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| Q |
213 |
taaaaacctctcatatcagtatatcgtataagtcacc |
249 |
Q |
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| T |
15626691 |
taaaaacctctcatatcagtataacgtataagtcacc |
15626727 |
T |
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Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 15626445 - 15626550
Alignment:
| Q |
13 |
agacaaacgcatcgtagtttcgacataaacttcataggactaaagtaataccataaattataattt-gaaggattcattgacattataaattaccttatt |
111 |
Q |
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| T |
15626445 |
agacaaacgcattgtagtttcgacataaacttcataggaccaaagtaataccagaaattataatttcgaaggattcattgacattataaattaccttatt |
15626544 |
T |
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| Q |
112 |
atttta |
117 |
Q |
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| T |
15626545 |
atttta |
15626550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 5395487 - 5395408
Alignment:
| Q |
37 |
ataaacttca-taggactaaagtaataccataaattataatttgaaggattcattgacattataaattaccttattattt |
115 |
Q |
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| T |
5395487 |
ataaacttcaataggactaaagaaacaccagaaattgtaatttgaaggattcattgacattataaattacgttattattt |
5395408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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