View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3185_high_28 (Length: 238)
Name: NF3185_high_28
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3185_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 7577961 - 7578098
Alignment:
| Q |
1 |
tatggagatgtgatcagtgataccatcgcccaaacataaaatgataccaagaagggtttgacaattggctattgtaannnnnnnnnaatgataaatttta |
100 |
Q |
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| T |
7577961 |
tatggagatgtgatcagtgataccatcgcccaaacataaaatgataccaagaagggtttgacaattggctattgtaatttttttttaatgataaatttta |
7578060 |
T |
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| Q |
101 |
gtatatttgttaattagtatgttaaggactttaaccat |
138 |
Q |
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| T |
7578061 |
gtatatttgttaattagtatgttaaggacttaaaccat |
7578098 |
T |
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Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 7579387 - 7579490
Alignment:
| Q |
130 |
tttaaccattcagatatacacaaaactgtaagagctaaataaa----------ttaaattattaacatgtttaaattgagatgataatgtttaaattacc |
219 |
Q |
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| T |
7579387 |
tttaaccatacagatatacacaaaactgtaagagctaaataaattaaattaaattaaattattaacatgtttaaattgatatgataatgtttaaattacc |
7579486 |
T |
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| Q |
220 |
atgt |
223 |
Q |
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|||| |
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| T |
7579487 |
atgt |
7579490 |
T |
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