View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3185_high_3 (Length: 520)

Name: NF3185_high_3
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3185_high_3
NF3185_high_3
[»] chr2 (4 HSPs)
chr2 (1-498)||(14815200-14815712)
chr2 (16-187)||(14461934-14462107)
chr2 (46-191)||(15089238-15089383)
chr2 (107-191)||(4259681-4259765)
[»] chr7 (3 HSPs)
chr7 (16-191)||(6651112-6651287)
chr7 (16-191)||(36714120-36714297)
chr7 (347-407)||(30335101-30335161)
[»] chr5 (6 HSPs)
chr5 (18-191)||(14050475-14050649)
chr5 (266-419)||(19831816-19831975)
chr5 (105-191)||(15567377-15567463)
chr5 (354-419)||(6037126-6037191)
chr5 (105-191)||(34152413-34152499)
chr5 (334-419)||(19827915-19828002)
[»] scaffold0001 (1 HSPs)
scaffold0001 (17-145)||(67994-68122)
[»] chr4 (7 HSPs)
chr4 (132-191)||(41972922-41972981)
chr4 (132-191)||(15993172-15993231)
chr4 (348-419)||(32839093-32839164)
chr4 (348-427)||(46867448-46867527)
chr4 (16-60)||(15993291-15993335)
chr4 (16-76)||(41972993-41973053)
chr4 (348-420)||(41982722-41982794)
[»] chr8 (5 HSPs)
chr8 (105-191)||(4780859-4780945)
chr8 (18-159)||(33468596-33468737)
chr8 (266-482)||(8085347-8085567)
chr8 (103-191)||(23772238-23772326)
chr8 (441-482)||(35134018-35134059)
[»] chr3 (5 HSPs)
chr3 (18-88)||(27856795-27856865)
chr3 (207-239)||(53114236-53114268)
chr3 (118-161)||(29541087-29541130)
chr3 (105-191)||(28727894-28727980)
chr3 (334-419)||(53114369-53114456)
[»] chr1 (2 HSPs)
chr1 (352-482)||(12664408-12664540)
chr1 (137-191)||(46481614-46481668)
[»] scaffold0426 (1 HSPs)
scaffold0426 (349-406)||(3437-3494)
[»] chr6 (2 HSPs)
chr6 (334-420)||(10458016-10458104)
chr6 (351-407)||(32056636-32056692)


Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Complemental strand, 14815712 - 14815200
Alignment:
Q  1 aactgctattaagccataaaaatattgaccttaagtgatatttgcttaagccacaaaacataattaaaacgatcatctacaccaacttcagatgttatca 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  14815712 aactgctattaagccataaaaatattgaccttaagtggtatttgcttaagccacaaaacatgattaaaacgatcatctacaccaacttcagaagttatca 14815613  T
Q  101 aataattataagcacttttgtctgtgtatttatgggaagaatgaagcttccaaatccacatattagtcacaccaacctgcaaaacaacaagcaaatgtaa 200  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  14815612 aataattataagcacttttgactgtgtatttatgggaagaaagaagcttccaaatccacatatcagtcacaccaacctgcaaaacaacaagcaaatataa 14815513  T
Q  201 caatttaattcatttcaaacatgcaaatggtaataaatatcagtttaattcannnnnnnnnnnnnagcatttatttgacattatcaaggattagtttgat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||    
T  14815512 caatttaattcatttcaaacatgcaaatggtaataaatatcagtttaattcattttttagcttttagcatttatttgacattatcaaggattagtttgat 14815413  T
Q  301 agttgagataaattattgaattgtcgatttgat----agtgacataactcagaccatcttgatttttcatgaataattcatagatcgaattgacaatata 396  Q
    ||||||||||||||||||||| |||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  14815412 agttgagataaattattgaatggtcgatttgatagtgagtgacataactcagaccatcttgatttttcatgaataattcatagatcaatttgacaatata 14815313  T
Q  397 acaatttgtaacaactttcatttttaaaaaat-----------tcaaaattctcgatcaattctatcattgaatatgtggcatctgagttgacaatctac 485  Q
    ||||||||||||||||||||||||||||||||           | ||||||||||||||||||  |||||||||||||||| ||||||||||||||||||    
T  14815312 acaatttgtaacaactttcatttttaaaaaatccaaaaaaaaattaaaattctcgatcaattccgtcattgaatatgtggcgtctgagttgacaatctac 14815213  T
Q  486 acaaacacttaaa 498  Q
    |||||| ||||||    
T  14815212 acaaactcttaaa 14815200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 14462107 - 14461934
Alignment:
Q  16 ataaaaatattgaccttaagtgatatttgcttaagccacaaaacataattaaaacgatcatctacaccaacttcagatgttatcaaataattat-aagca 114  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||  ||||| | |||||| ||| | ||| |||||  ||||| |||||    
T  14462107 ataaaaatattgaccttaagtgaaatttgcttaagccacaaaacatgattaaaacactcatcaataccaacctcaaaagttgtcaaaagattataaagca 14462008  T
Q  115 cttttgtctgtgtatttatgggaagaatgaagcttccaaatccacatattagtcaca-ccaacctgcaaaacaa 187  Q
    |||||| || |||||| |||| |||||||||||||| |||||||||| | ||||||| ||||||| ||||||||    
T  14462007 cttttgactatgtattgatggaaagaatgaagcttctaaatccacatttcagtcacatccaacctacaaaacaa 14461934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 46 - 191
Target Start/End: Complemental strand, 15089383 - 15089238
Alignment:
Q  46 ttaagccacaaaacataattaaaacgatcatctacaccaacttcagatgttatcaaataattataagcacttttgtctgtgtatttatgggaagaatgaa 145  Q
    |||||||||||||||| ||||||||| ||||| |||||||||||||| |||||| ||  |||||||||||||||  | ||||||  ||||||||||| ||    
T  15089383 ttaagccacaaaacatgattaaaacgttcatcaacaccaacttcagaagttatcgaaagattataagcacttttaaccgtgtatcgatgggaagaataaa 15089284  T
Q  146 gcttccaaatccacatattagtcacaccaacctgcaaaacaacaag 191  Q
    ||||||||| |||| |||  || |||| ||||||||||||||||||    
T  15089283 gcttccaaaaccacttatcggtaacacaaacctgcaaaacaacaag 15089238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 4259681 - 4259765
Alignment:
Q  107 tataagcacttttgtctgtgtatttatgggaagaatgaagcttccaaatccacatattagtcacaccaacctgcaaaacaacaag 191  Q
    |||||||||||||| | |||||  | | | ||||||||||||| ||||||||||| | ||| |||||||||||||||||||||||    
T  4259681 tataagcacttttgaccgtgtacctttagaaagaatgaagctttcaaatccacatgtcagttacaccaacctgcaaaacaacaag 4259765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 6651112 - 6651287
Alignment:
Q  16 ataaaaatattgaccttaagtgatatttgcttaagccacaaaacataattaaaacgatcatctacaccaacttcagatgttatcaaataattataagcac 115  Q
    ||||||||||| |||||||| |  ||||||||||| |||||||||| ||||||| | ||||| || | |||||||||  || |||||| |||||||||||    
T  6651112 ataaaaatattcaccttaagaggaatttgcttaaggcacaaaacatgattaaaatggtcatcaactcaaacttcagaatttgtcaaatgattataagcac 6651211  T
Q  116 ttttgtctgtgtatttatgggaagaatgaagcttccaaatccacatattagtcacaccaacctgcaaaacaacaag 191  Q
    ||||| |||| ||   ||||||||||||||||||  |||||||  | | ||||||||||| || ||||||||||||    
T  6651212 ttttgactgtataccgatgggaagaatgaagcttttaaatccatctgtcagtcacaccaatctacaaaacaacaag 6651287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 36714120 - 36714297
Alignment:
Q  16 ataaaaatattgaccttaagtgatatttgcttaagccacaaaacataattaaaacgatcatctacaccaacttcagatgttatcaaataattataagcac 115  Q
    |||||||||||||| ||||||   |||||||||||||||||||||| ||||||||| ||||| ||||||| || | | ||| |||||  |||| |||||     
T  36714120 ataaaaatattgacattaagtcgaatttgcttaagccacaaaacatgattaaaacggtcatcaacaccaattttaaaagttgtcaaaagattacaagcat 36714219  T
Q  116 ttttgtctgtgtat--ttatgggaagaatgaagcttccaaatccacatattagtcacaccaacctgcaaaacaacaag 191  Q
    ||||| |||| |||   ||||||||||||||| ||||||||| ||  ||| || ||||||||||| ||||||||||||    
T  36714220 ttttgactgtttatcgatatgggaagaatgaaacttccaaattcatctatcagccacaccaacctacaaaacaacaag 36714297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 407
Target Start/End: Original strand, 30335101 - 30335161
Alignment:
Q  347 agaccatcttgatttttcatgaataattcatagatcgaattgacaatataacaatttgtaa 407  Q
    ||||||||||||||||| ||||||||||||  |||||| ||||||||  ||||| ||||||    
T  30335101 agaccatcttgatttttaatgaataattcagggatcgatttgacaatgcaacaaattgtaa 30335161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 14050649 - 14050475
Alignment:
Q  18 aaaaatattgaccttaagtgatatttgcttaagccacaaaacataattaaaacgatcatctacaccaacttcagatgttatcaaataattataagcactt 117  Q
    ||||||||||||||||||||  |||||||||||||||| ||||| | ||||||  ||||| ||||||| |||| | ||| |||||  |||||||||| ||    
T  14050649 aaaaatattgaccttaagtggaatttgcttaagccacataacatgactaaaacagtcatcaacaccaatttcacaagttttcaaaagattataagcattt 14050550  T
Q  118 t-tgtctgtgtatttatgggaagaatgaagcttccaaatccacatattagtcacaccaacctgcaaaacaacaag 191  Q
    | |  ||| ||||  |||||||||||||||||||||||| ||| | | ||||||||||||||  |||| ||||||    
T  14050549 tattactgagtatcgatgggaagaatgaagcttccaaattcacctgtcagtcacaccaacctataaaataacaag 14050475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 419
Target Start/End: Original strand, 19831816 - 19831975
Alignment:
Q  266 agcatttatttgacattatcaaggattagtttgatagttgagataaattattgaattgtcgatttgatagtga----cataactca--gaccatcttgat 359  Q
    ||||||||||||||| |||||  ||| |||||||| ||| |||||||| ||| |||  |||||||||||||||    ||||| |||  ||||||||||||    
T  19831816 agcatttatttgacaatatcagagatcagtttgatcgttaagataaataattcaatgatcgatttgatagtgattgacataattcacagaccatcttgat 19831915  T
Q  360 ttttcatgaataattcatagatcgaattgacaatataacaatttgtaacaactttcattt 419  Q
    |||| || |||||||||  |||| | |||||||| |||||||||||||  ||||||||||    
T  19831916 ttttaattaataattcaaggatcaatttgacaatgtaacaatttgtaatgactttcattt 19831975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 15567463 - 15567377
Alignment:
Q  105 attataagcacttttgtctgtgtatttatgggaagaatgaagcttccaaatccacatattagtcacaccaacctgcaaaacaacaag 191  Q
    |||||||||| ||||   |||||||  ||||||||| |||| ||||||||||||||| |||||| ||||||||||||||||||||||    
T  15567463 attataagcattttttattgtgtatcaatgggaagattgaaacttccaaatccacatgttagtcgcaccaacctgcaaaacaacaag 15567377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 354 - 419
Target Start/End: Complemental strand, 6037191 - 6037126
Alignment:
Q  354 cttgatttttcatgaataattcatagatcgaattgacaatataacaatttgtaacaactttcattt 419  Q
    |||||||||| |||||||||||||| ||||| |||||| ||||||||||||||| |||||||||||    
T  6037191 cttgatttttaatgaataattcataaatcgatttgacagtataacaatttgtaataactttcattt 6037126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 105 - 191
Target Start/End: Original strand, 34152413 - 34152499
Alignment:
Q  105 attataagcacttttgtctgtgtatttatgggaagaatgaagcttccaaatccacatattagtcacaccaacctgcaaaacaacaag 191  Q
    ||||||||| |||||  | |||||  ||| ||||||||||||||||||||||||| | | | |||||||||||||||| ||||||||    
T  34152413 attataagcgcttttaaccgtgtacctataggaagaatgaagcttccaaatccacctgtcattcacaccaacctgcaatacaacaag 34152499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 419
Target Start/End: Complemental strand, 19828002 - 19827915
Alignment:
Q  334 agtgacataactca--gaccatcttgatttttcatgaataattcatagatcgaattgacaatataacaatttgtaacaactttcattt 419  Q
    |||||||||| |||  |||||||||||||||| |||||||||| |  |||||| |||||| | |||||||||||||  ||||||||||    
T  19828002 agtgacataattcatggaccatcttgatttttaatgaataatttagggatcgatttgacagtgtaacaatttgtaatgactttcattt 19827915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 67994 - 68122
Alignment:
Q  17 taaaaatattgaccttaagtgatatttgcttaagccacaaaacataattaaaacgatcatctacaccaacttcagatgttatcaaataattataagcact 116  Q
    ||||| |||||| ||||||||  |||| ||||||| ||||||||| ||||||||| ||||| | |  |||||||||  |||| |||  ||||||||||||    
T  67994 taaaattattgatcttaagtggaattttcttaagctacaaaacatgattaaaacggtcatcaatattaacttcagaaattattaaaagattataagcact 68093  T
Q  117 tttgtctgtgtatttatgggaagaatgaa 145  Q
    |||| ||||||||  ||||||||||||||    
T  68094 tttgactgtgtatcgatgggaagaatgaa 68122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 41972981 - 41972922
Alignment:
Q  132 atgggaagaatgaagcttccaaatccacatattagtcacaccaacctgcaaaacaacaag 191  Q
    |||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||    
T  41972981 atgggaagaatgaagcttccaaatccacatgtcagtcacacgaacctgcaaaacaacaag 41972922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 15993231 - 15993172
Alignment:
Q  132 atgggaagaatgaagcttccaaatccacatattagtcacaccaacctgcaaaacaacaag 191  Q
    ||||||| |||||||||||||||||||| | ||||||||||||||||||||| |||||||    
T  15993231 atgggaataatgaagcttccaaatccacctgttagtcacaccaacctgcaaaccaacaag 15993172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 348 - 419
Target Start/End: Original strand, 32839093 - 32839164
Alignment:
Q  348 gaccatcttgatttttcatgaataattcatagatcgaattgacaatataacaatttgtaacaactttcattt 419  Q
    ||||||||||||| ||  |||||||||||  |||||| |||||||| |||||||||||||  ||||||||||    
T  32839093 gaccatcttgattcttagtgaataattcagggatcgacttgacaatgtaacaatttgtaatgactttcattt 32839164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 348 - 427
Target Start/End: Complemental strand, 46867527 - 46867448
Alignment:
Q  348 gaccatcttgatttttcatgaataattcatagatcgaattgacaatataacaatttgtaacaactttcatttttaaaaaa 427  Q
    ||||| |||||||||| ||||||||||||  |||||| |||| | | ||||||||| |||  ||||||||||||||||||    
T  46867527 gaccaacttgatttttaatgaataattcaaggatcgatttgatagtgtaacaatttataattactttcatttttaaaaaa 46867448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 15993335 - 15993291
Alignment:
Q  16 ataaaaatattgaccttaagtgatatttgcttaagccacaaaaca 60  Q
    |||||||||||| |||||||||  |||||||||||||||||||||    
T  15993335 ataaaaatattggccttaagtggaatttgcttaagccacaaaaca 15993291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 41973053 - 41972993
Alignment:
Q  16 ataaaaatattgaccttaagtgatatttgcttaagccacaaaacataattaaaacgatcat 76  Q
    ||||||||||||||||||||||  |||| |||||| |||||||||| |||| |||| ||||    
T  41973053 ataaaaatattgaccttaagtggaattttcttaaggcacaaaacatgattataacggtcat 41972993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 420
Target Start/End: Original strand, 41982722 - 41982794
Alignment:
Q  348 gaccatcttgatttttcatgaataattcatagatcgaattgacaatataacaatttgtaacaactttcatttt 420  Q
    ||||| |||||||||| |||||||||| | ||||||| |||| | | |||||||||||||  ||||| |||||    
T  41982722 gaccaacttgatttttaatgaataatttaaagatcgatttgatagtgtaacaatttgtaatgacttttatttt 41982794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 191
Target Start/End: Original strand, 4780859 - 4780945
Alignment:
Q  105 attataagcacttttgtctgtgtatttatgggaagaatgaagcttccaaatccacatattagtcacaccaacctgcaaaacaacaag 191  Q
    |||||||||||||||| | ||||| |||||||||||||||||||||||||||||| | | || |||| |||||| |||||| |||||    
T  4780859 attataagcacttttgaccgtgtacttatgggaagaatgaagcttccaaatccacctgtcagacacatcaacctacaaaaccacaag 4780945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 33468596 - 33468737
Alignment:
Q  18 aaaaatattgaccttaagtgatatttgcttaagccacaaaacataattaaaacgatcatctacaccaacttcagatgttatcaaataattataagcactt 117  Q
    ||||||||||  | ||||||  |||| ||||||||||||||||| ||||||||| ||||| ||| ||| || ||| ||| |||||  || |||||||  |    
T  33468596 aaaaatattgctcgtaagtggaattttcttaagccacaaaacatgattaaaacggtcatcaacatcaattttagaagttgtcaaaagataataagcatat 33468695  T
Q  118 ttgtctgtgtatttatgggaagaatgaagcttccaaatccac 159  Q
    ||  || |||||  ||||||||||||||||||||||||||||    
T  33468696 tttactatgtatggatgggaagaatgaagcttccaaatccac 33468737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 482
Target Start/End: Complemental strand, 8085567 - 8085347
Alignment:
Q  266 agcatttatttgacattatcaaggattagtttgatagttgagataaattattgaattgtcgatttgatagtga----cataactca--gaccatcttgat 359  Q
    ||||||||||||||| |||||   || |||| ||||||| |||||||| ||| |||  |||||||||||||||    ||||| |||  ||||||||||||    
T  8085567 agcatttatttgacaatatcagatatcagttcgatagttaagataaataatttaatgatcgatttgatagtgagtgacataattcatggaccatcttgat 8085468  T
Q  360 ttttcatgaataattcatagatcgaattgacaatataacaatttgtaacaactttcatttttaaaaaattcaaaattctcgatcaattctatcattgaat 459  Q
    |||| |||| |||| ||  |||||| |||| ||||||| |||| ||||   |||||| ||| |||||| ||||| |||| |||||| |  |||  ||| |    
T  8085467 ttttaatgagtaatccagtgatcgatttgaaaatataataattcgtaatgtctttca-tttaaaaaaaatcaaatttct-gatcaacttcatctatgagt 8085370  T
Q  460 atgtggcatctgagttgacaatc 482  Q
    |||||||||| ||||||||||||    
T  8085369 atgtggcatcagagttgacaatc 8085347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 191
Target Start/End: Complemental strand, 23772326 - 23772238
Alignment:
Q  103 taattataagcacttttgtctgtgtatttatgggaagaatgaagcttccaaatccacatattagtcacaccaacctgcaaaacaacaag 191  Q
    ||||||||||| ||||||   |||||  ||| |||||||||||||||  ||||||||   | |||||||||||||||||||||||||||    
T  23772326 taattataagcgcttttgatcgtgtacctattggaagaatgaagcttataaatccacccgtcagtcacaccaacctgcaaaacaacaag 23772238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 482
Target Start/End: Complemental strand, 35134059 - 35134018
Alignment:
Q  441 atcaattctatcattgaatatgtggcatctgagttgacaatc 482  Q
    |||||||  ||| |||||||||||||||||||||||||||||    
T  35134059 atcaatttcatctttgaatatgtggcatctgagttgacaatc 35134018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 27856795 - 27856865
Alignment:
Q  18 aaaaatattgaccttaagtgatatttgcttaagccacaaaacataattaaaacgatcatctacaccaactt 88  Q
    ||||||||| ||||||||||  |||||||||||| ||||||||| ||||||| | ||||| || |||||||    
T  27856795 aaaaatattaaccttaagtggaatttgcttaagctacaaaacatgattaaaatggtcatcaactccaactt 27856865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 53114236 - 53114268
Alignment:
Q  207 aattcatttcaaacatgcaaatggtaataaata 239  Q
    |||||||||||||||||||||||||||||||||    
T  53114236 aattcatttcaaacatgcaaatggtaataaata 53114268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 161
Target Start/End: Original strand, 29541087 - 29541130
Alignment:
Q  118 ttgtctgtgtatttatgggaagaatgaagcttccaaatccacat 161  Q
    ||||||||||||| |||||||||||||| ||||||||| |||||    
T  29541087 ttgtctgtgtattgatgggaagaatgaatcttccaaatacacat 29541130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 28727980 - 28727894
Alignment:
Q  105 attataagcacttttgtctgtgtatttatgggaagaatgaagcttccaaatccacatattagtcacaccaacctgcaaaacaacaag 191  Q
    |||| ||||||||||| | | |||| | || ||||||||||||||||||||||||   | || ||| |||||||||||||| |||||    
T  28727980 attaaaagcacttttgaccgggtatatgtgagaagaatgaagcttccaaatccaccagtcagacacgccaacctgcaaaaccacaag 28727894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 419
Target Start/End: Original strand, 53114369 - 53114456
Alignment:
Q  334 agtgacataactca--gaccatcttgatttttcatgaataattcatagatcgaattgacaatataacaatttgtaacaactttcattt 419  Q
    |||||||||| |||  ||||| |||||||||| |||||||||| |  |||| |||  ||| |||||||||||||||  ||||||||||    
T  53114369 agtgacataattcatggaccagcttgatttttaatgaataatttagggatcaaatccacagtataacaatttgtaatgactttcattt 53114456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 352 - 482
Target Start/End: Original strand, 12664408 - 12664540
Alignment:
Q  352 atcttgatttttcatgaataattcatagatcgaattgacaatataacaatttgtaacaactttcattttt--aaaaaattcaaaattctcgatcaattct 449  Q
    |||||||||||| ||||||||||||  ||||||  ||||||| ||| |||||||||  | |||||||| |  |||||| |||||||| || ||||||| |    
T  12664408 atcttgatttttaatgaataattcaaggatcgatgtgacaatgtaataatttgtaatgaatttcatttataaaaaaaaatcaaaattttcaatcaatttt 12664507  T
Q  450 atcattgaatatgtggcatctgagttgacaatc 482  Q
    |||  | ||||  || ||| |||||||||||||    
T  12664508 atccctaaatacatgacatttgagttgacaatc 12664540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 46481668 - 46481614
Alignment:
Q  137 aagaatgaagcttccaaatccacatattagtcacaccaacctgcaaaacaacaag 191  Q
    ||||||||||||||||||| ||||| || | ||||||||| |||||||| |||||    
T  46481668 aagaatgaagcttccaaattcacatgttcgacacaccaacatgcaaaaccacaag 46481614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 406
Target Start/End: Complemental strand, 3494 - 3437
Alignment:
Q  349 accatcttgatttttcatgaataattcatagatcgaattgacaatataacaatttgta 406  Q
    |||| ||| |||||| |||||||||||| ||||| | |||||||| ||||||||||||    
T  3494 accaactttatttttaatgaataattcagagatcaatttgacaatgtaacaatttgta 3437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 420
Target Start/End: Original strand, 10458016 - 10458104
Alignment:
Q  334 agtgacataactcag--accatcttgatttttcatgaataattcatagatcgaattgacaatataacaatttgtaacaactttcatttt 420  Q
    |||||||||| ||||  |||| ||| |||||| ||||||||||||  |||||| |||||| | |||||||||||||  |||||| ||||    
T  10458016 agtgacataattcagggaccaacttcatttttaatgaataattcaacgatcgatttgacagtgtaacaatttgtaatgactttcgtttt 10458104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 407
Target Start/End: Original strand, 32056636 - 32056692
Alignment:
Q  351 catcttgatttttcatgaataattcatagatcgaattgacaatataacaatttgtaa 407  Q
    ||||||||||||| |||||||||| |  |||| | |||||||| |||||||||||||    
T  32056636 catcttgatttttaatgaataatttaaggatcaatttgacaatgtaacaatttgtaa 32056692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University