View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3185_high_7 (Length: 433)
Name: NF3185_high_7
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3185_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 13 - 417
Target Start/End: Complemental strand, 25433402 - 25432995
Alignment:
| Q |
13 |
aaaattccaatcgattaaatatacattggtttgatttgattatgnnnnnnnnnn--caaactagtacttacagactaacttaaaggaacaagannnnnnn |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||| |
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| T |
25433402 |
aaaattccaatcgattaaatatacattggtttgatttgattatttttattttctttcaaactagaacttacagactaacttaa-ggaacaagattttttt |
25433304 |
T |
|
| Q |
111 |
-ccatcaaatttaaatggatgattgctcaatccctacaattttagcgtgtgaaacggtgattcactaaattgataccactttgatgaaaaattaacacat |
209 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
25433303 |
tccatcaaatttaaatggatgattgctcaatccttacaattttaacgtgtgaaacggtgattcattaaattgataccactctgatgaaaaattaacacat |
25433204 |
T |
|
| Q |
210 |
atatatggtaacacaccaatgcgcagtggaaataaatttccctaaatttgcaagaatctataaggagcagcaacaaatatatgacactggtgaaagcaga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
25433203 |
atatatggtaacacaccaatgcgcagtggaaataaatttccctaaacttgcaagaatctctaaggagcagcaacaaatatatgacagcggtgaaagcaga |
25433104 |
T |
|
| Q |
310 |
taagacacaagtaatcatagatttttaacgtggaaattccctcaagggt-aaaatcatatgtcgtttagaccaataaaaaagtcattgtaatcaaatata |
408 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||||||||| |||||||||||||| |
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| T |
25433103 |
taagacacaagtagtcatagatttttaacgtggaaatcccctcaagggtaaaaatcataagtcgtctagaccaataaaaaagtcactgtaatcaaatata |
25433004 |
T |
|
| Q |
409 |
ggtacaaaa |
417 |
Q |
| |
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||||||||| |
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| T |
25433003 |
ggtacaaaa |
25432995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 6858079 - 6858000
Alignment:
| Q |
191 |
tgatgaaaaattaacacatatatatggtaacacaccaatgcgcagtggaaataaatttccctaaatttgcaagaatctat |
270 |
Q |
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|||||| ||||||||||||| ||||||||||||| |||| |||| ||||||||| || || ||| |||||||||||||| |
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| T |
6858079 |
tgatgagaaattaacacataaatatggtaacacatcaatatgcagcggaaataaaatttcccaaacttgcaagaatctat |
6858000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 28338960 - 28339040
Alignment:
| Q |
208 |
atatatatggtaacacaccaatgcgcagtggaaataaatttccctaaatttgcaagaatctataaggagcagcaacaaata |
288 |
Q |
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|||||||||||||||||| ||||||||| ||||||||| || | ||| |||||||||||||| |||||| ||||||||| |
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| T |
28338960 |
atatatatggtaacacacaaatgcgcagcggaaataaaatttctcaaacttgcaagaatctatgaggagctacaacaaata |
28339040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 295
Target Start/End: Complemental strand, 35870333 - 35870236
Alignment:
| Q |
198 |
aaattaacacatatatatggtaacacaccaatgcgcagtggaaataaatttccctaaatttgcaagaatctataaggagcagcaacaaatatatgaca |
295 |
Q |
| |
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||||||||||||| ||| ||| |||||||||||| | || |||||| ||| | ||| |||||||||| ||| ||||||| ||||||||| |||||| |
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| T |
35870333 |
aaattaacacataaatactgtaccacaccaatgcgtaagggtaataaaattctccaaacttgcaagaatgtatgaggagcaacaacaaataaatgaca |
35870236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 35201364 - 35201413
Alignment:
| Q |
238 |
gaaataaatttccctaaatttgcaagaatctataaggagcagcaacaaat |
287 |
Q |
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|||||||| ||||| ||| ||||||||||||| |||||||| |||||||| |
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| T |
35201364 |
gaaataaaattccccaaacttgcaagaatctaaaaggagcaacaacaaat |
35201413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 354
Target Start/End: Original strand, 18706031 - 18706131
Alignment:
| Q |
257 |
ttgcaagaatctataaggagcagcaacaaatatatgacactggtgaaagcagat--aagacacaagtaatcatagat-ttttaacgtggaaattccctca |
353 |
Q |
| |
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|||||||||||||| ||||||| ||| ||||| |||||| ||||||||| || ||||||||||| | ||| ||| |||||||||||||| |||||| |
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| T |
18706031 |
ttgcaagaatctatgaggagcaacaataaataaatgacagcagtgaaagcaaataaaagacacaagtgaacattgatattttaacgtggaaaacccctca |
18706130 |
T |
|
| Q |
354 |
a |
354 |
Q |
| |
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| |
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| T |
18706131 |
a |
18706131 |
T |
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