View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3185_high_8 (Length: 396)

Name: NF3185_high_8
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3185_high_8
NF3185_high_8
[»] chr2 (11 HSPs)
chr2 (10-390)||(32181911-32182277)
chr2 (10-193)||(32174065-32174248)
chr2 (36-193)||(32534058-32534215)
chr2 (10-105)||(32147548-32147643)
chr2 (10-105)||(2821410-2821505)
chr2 (23-105)||(32156377-32156459)
chr2 (199-276)||(32155515-32155592)
chr2 (10-98)||(32118463-32118552)
chr2 (295-381)||(32154885-32154970)
chr2 (10-101)||(32152313-32152404)
chr2 (23-74)||(32212260-32212311)
[»] chr1 (1 HSPs)
chr1 (209-275)||(15928770-15928836)


Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 390
Target Start/End: Complemental strand, 32182277 - 32181911
Alignment:
Q  10 aagaatatgatcgaggaagagacaaagaattaagaaaatatcaaagaagaaggtgaactaggtagtgaaaatatataggttatgtttggttatgtagtgt 109  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  32182277 aagaaaatgatcgaggaagagacaaagaatgaagaaaatatcaaagaagaaggtgaactaggtagtgaaaatatataggttatgtttggttatgtaccgt 32182178  T
Q  110 aaaacattaagctaaactcataagtagtcattctcatcctttgatcaacatctattgtgacttgagattctcttcagtcgggtctctagtttttgcaaga 209  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  32182177 aaaacattaagctaaactcataagtagtcattctcatcctttgaccaacatctattgagacttgagattctcttcagtcgggtctctattttttgcaaga 32182078  T
Q  210 gggtatggacgataggtggagctgacaaaatgatgcggctaaaggttacatagtaagcggtgtttactatgtgtcgtgatgacaggtcacctagctagct 309  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||              |||||||||||||||||||||||||    
T  32182077 gggtatggacgataggtggagctgacaaaatgatccggctaaaggttacatagtaagcggt--------------gtgatgacaggtcacctagctagct 32181992  T
Q  310 tctcctagctaatccatttcctgatttgttgtatgtaattggttctagctacttttgaattctatcattgcagtccttgtg 390  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32181991 tctcttagctaatccatttcctgatttgttgtatgtaattggttctagctacttttgaattctatcattgcagtccttgtg 32181911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 32174248 - 32174065
Alignment:
Q  10 aagaatatgatcgaggaagagacaaagaattaagaaaatatcaaagaagaaggtgaactaggtagtgaaaatatataggttatgtttggttatgtagtgt 109  Q
    ||||| |||||| ||||||||  ||| ||| ||||||| || ||||||||||||||||||||||| |||||||||||||| |||||||||| |||| |||    
T  32174248 aagaaaatgatcaaggaagaggtaaaaaatgaagaaaacattaaagaagaaggtgaactaggtagagaaaatatataggtcatgtttggttctgtactgt 32174149  T
Q  110 aaaacattaagctaaactcataagtagtcattctcatcctttgatcaacatctattgtgacttgagattctcttcagtcgggtc 193  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||| || || ||||| ||||||||||||||||||||    
T  32174148 aaaacattaagctaagctcataagtagacattctcatcctttgatcaacatgtactgagactttagattctcttcagtcgggtc 32174065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 36 - 193
Target Start/End: Complemental strand, 32534215 - 32534058
Alignment:
Q  36 gaattaagaaaatatcaaagaagaaggtgaactaggtagtgaaaatatataggttatgtttggttatgtagtgtaaaacattaagctaaactcataagta 135  Q
    |||| |||||||||||||||||||||||||| ||||||| |||||||||||||  |||||||||| |||| | |||||||||||||||| || |||||||    
T  32534215 gaatgaagaaaatatcaaagaagaaggtgaattaggtagagaaaatatataggccatgtttggttctgtactataaaacattaagctaagctaataagta 32534116  T
Q  136 gtcattctcatcctttgatcaacatctattgtgacttgagattctcttcagtcgggtc 193  Q
       | ||||||||||||||  |||||||||| || |||||||| |||||||| |||||    
T  32534115 aatactctcatcctttgatagacatctattgagatttgagattatcttcagttgggtc 32534058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 32147643 - 32147548
Alignment:
Q  10 aagaatatgatcgaggaagagacaaagaattaagaaaatatcaaagaagaaggtgaactaggtagtgaaaatatataggttatgtttggttatgta 105  Q
    ||||| |||||| ||||||||| ||||| | ||||||||| |||||||||||||||||||||||| |||||||||||||  |||||||||||||||    
T  32147643 aagaaaatgatcaaggaagagataaagattgaagaaaataacaaagaagaaggtgaactaggtagagaaaatatataggccatgtttggttatgta 32147548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 2821410 - 2821505
Alignment:
Q  10 aagaatatgatcgaggaagagacaaagaattaagaaaatatcaaagaagaaggtgaactaggtagtgaaaatatataggttatgtttggttatgta 105  Q
    ||||| ||||||||||| |||| ||||||| ||||||||||| ||||||||  |||||||||||| |||||||||||||  |||||||||||||||    
T  2821410 aagaaaatgatcgaggatgagataaagaatgaagaaaatatccaagaagaatctgaactaggtagagaaaatatataggccatgtttggttatgta 2821505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 32156459 - 32156377
Alignment:
Q  23 aggaagagacaaagaattaagaaaatatcaaagaagaaggtgaactaggtagtgaaaatatataggttatgtttggttatgta 105  Q
    ||||||||| ||||||  |||||||| |||||||||||  ||||||||| ||||||||||||||||  |||||||||||||||    
T  32156459 aggaagagataaagaaggaagaaaatgtcaaagaagaatctgaactagggagtgaaaatatataggccatgtttggttatgta 32156377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 199 - 276
Target Start/End: Complemental strand, 32155592 - 32155515
Alignment:
Q  199 tttttgcaagagggtatggacgataggtggagctgacaaaatgatgcggctaaaggttacatagtaagcggtgtttac 276  Q
    ||||||||||||||| || | ||||||||| ||||| |||||||| || |||||||||||||||||||| ||||||||    
T  32155592 tttttgcaagagggtgtgcaagataggtggtgctgataaaatgatccgactaaaggttacatagtaagccgtgtttac 32155515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 32118552 - 32118463
Alignment:
Q  10 aagaatatgatcgaggaagagacaa-agaattaagaaaatatcaaagaagaaggtgaactaggtagtgaaaatatataggttatgtttgg 98  Q
    ||||| |||||| |||||||||  | ||||| ||||||||||||||||||||  |||||||| ||| |||||||||||||| ||||||||    
T  32118552 aagaaaatgatcaaggaagagatgatagaatgaagaaaatatcaaagaagaacatgaactagatagagaaaatatataggtcatgtttgg 32118463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 381
Target Start/End: Complemental strand, 32154970 - 32154885
Alignment:
Q  295 gtcacctagctagcttctcctagctaatccatttcctgatttgttgtatgtaattggttctagctacttttgaattctatcattgca 381  Q
    ||||| |||||||||||   | ||||| || ||||| |||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  32154970 gtcacatagctagcttcgtttggctaagccttttcc-gatttgttgtttgtaattggttctagatacttttgatttctatcattgca 32154885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 32152404 - 32152313
Alignment:
Q  10 aagaatatgatcgaggaagagacaaagaattaagaaaatatcaaagaagaaggtgaactaggtagtgaaaatatataggttatgtttggtta 101  Q
    ||||| |||||| ||||||| |  || ||| |||||| |||||||| ||||  ||||||| |||| ||||||||||||| ||||||||||||    
T  32152404 aagaaaatgatcaaggaagacattaaaaatgaagaaattatcaaaggagaacatgaactatgtagagaaaatatataggctatgtttggtta 32152313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 32212260 - 32212311
Alignment:
Q  23 aggaagagacaaagaattaagaaaatatcaaagaagaaggtgaactaggtag 74  Q
    ||||||||| ||| ||| ||||||||||||||||||||  ||||||||||||    
T  32212260 aggaagagataaaaaatgaagaaaatatcaaagaagaacatgaactaggtag 32212311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 15928770 - 15928836
Alignment:
Q  209 agggtatggacgataggtggagctgacaaaatgatgcggctaaaggttacatagtaagcggtgttta 275  Q
    ||||| |||| |||||||| || || |||  |||| ||||||||||||||||| |||||||||||||    
T  15928770 agggtgtggaagataggtgaagttggcaacttgatccggctaaaggttacataataagcggtgttta 15928836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University