View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3185_low_13 (Length: 388)

Name: NF3185_low_13
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3185_low_13
NF3185_low_13
[»] scaffold1202 (1 HSPs)
scaffold1202 (1-331)||(716-1056)
[»] scaffold0150 (1 HSPs)
scaffold0150 (1-331)||(6938-7278)
[»] chr4 (2 HSPs)
chr4 (1-178)||(12356493-12356682)
chr4 (1-126)||(20873967-20874091)
[»] chr5 (7 HSPs)
chr5 (1-126)||(17457940-17458077)
chr5 (1-80)||(24562937-24563016)
chr5 (1-80)||(24603971-24604050)
chr5 (80-153)||(22696209-22696282)
chr5 (80-144)||(20850474-20850539)
chr5 (85-126)||(25932940-25932981)
chr5 (86-143)||(26158830-26158886)
[»] chr7 (3 HSPs)
chr7 (72-266)||(6714918-6715112)
chr7 (80-143)||(11776622-11776686)
chr7 (80-147)||(9865734-9865802)
[»] chr6 (2 HSPs)
chr6 (30-126)||(977412-977505)
chr6 (20-78)||(8885923-8885982)
[»] chr2 (2 HSPs)
chr2 (81-150)||(19007343-19007412)
chr2 (33-147)||(10079309-10079433)
[»] chr8 (1 HSPs)
chr8 (88-148)||(24114515-24114574)
[»] chr3 (1 HSPs)
chr3 (87-155)||(17521100-17521169)


Alignment Details
Target: scaffold1202 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: scaffold1202
Description:

Target: scaffold1202; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 1056 - 716
Alignment:
Q  1 tgagtaaatatgtaaattatatggtgttgtatttggtgagtttcttcatgcatcatatcatgattaggattttggtgacg------------tgtatgtt 88  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||            ||||||||    
T  1056 tgagtaaatatgtaaatt-tatggtgttgtatttggtgagtttcttcatgcatcatattatgattaggattctggtgacgattctagtgacgtgtatgtt 958  T
Q  89 cagtaacataactatgacatacaatattggtgagtagaaatggtaccacatgcatataggtgataggggtgtcttgcataatgcatataaatgttgatgt 188  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  957 cagtaacataactctgacatataatattggtgagtagaaatggtaccacatgcatgtaggtgacaggggtgtcttgcataatgcatataaatgttgatgt 858  T
Q  189 gaataactgatgttcattgtgtatgatgtgtgtgaatggtgatgttaaaattggtgagagttatgatgatgtgcttaattgttgatgactgacaattatt 288  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  857 gaataactgatattcattgtgtatgatgtgtgtgaatgatgatgttaaaattggtgagagttatgatgatctgcttaattgttgatgactgacaattatt 758  T
Q  289 attatttagtggttgttcgtgtgtactagatacgagttatgaa 331  Q
    |||||||||| | ||||| |||||||||||||||| |||||||    
T  757 attatttagt-gctgttcatgtgtactagatacgatttatgaa 716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 6938 - 7278
Alignment:
Q  1 tgagtaaatatgtaaattatatggtgttgtatttggtgagtttcttcatgcatcatatcatgattaggattttggtgacg------------tgtatgtt 88  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||             ||||| ||    
T  6938 tgagtaaatatgtaaatt-tatggtgttgtatttggtgagtttcttcatacatcatatcatgattatgattctggtgacaattatggtgacatgtatctt 7036  T
Q  89 cagtaacataactatgacatacaatattggtgagtagaaatggtaccacatgcatataggtgataggggtgtcttgcataatgcatataaatgttgatgt 188  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  7037 cagtaacataactctgacatataatattggtgagtaaaaatggtaccatatgcatgtaggtgataagggtgtcttgcataatgcatataaatgttgatgt 7136  T
Q  189 gaataactgatgttcattgtgtatgatgtgtgtgaatggtgatgttaaaattggtgagagttatgatgatgtgcttaattgttgatgactgacaattatt 288  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  7137 gaataactgatattcattgtgtatgatgtgtgtgaatggtgatgttaaaattggtgagtgttatgatgatgtgcttaattgttgatgaccgacaattatt 7236  T
Q  289 attatttagtggttgttcgtgtgtactagatacgagttatgaa 331  Q
    |||||||||| ||||||| |||||||||||||||| |||||||    
T  7237 attatttagt-gttgttcatgtgtactagatacgatttatgaa 7278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 12356493 - 12356682
Alignment:
Q  1 tgagtaaatatgtaaattatatggtgttgtatttggtgagtttcttcatgcatcatatcatgattaggattttggtgacg------------tgtatgtt 88  Q
    |||||||||||||||||| |||||||||| |||| | |||||| || |||||||||||||||||||||||| ||||||||            | ||||||    
T  12356493 tgagtaaatatgtaaattttatggtgttgcatttagagagtttattaatgcatcatatcatgattaggattctggtgacgattctgataacttatatgtt 12356592  T
Q  89 cagtaacataactatgacatacaatattggtgagtagaaatggtaccacatgcatataggtgataggggtgtcttgcataatgcatataa 178  Q
    |||||| |||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||    
T  12356593 cagtaaaataactctgacatataatattggtgagtagaaattgtaccacatgcatataggtgataggggtgtgttgcatattgcatataa 12356682  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 20873967 - 20874091
Alignment:
Q  1 tgagtaaatatgtaaattatatggtgttgtatttggtgagtttcttcatgcatcatatcatgattaggattttggtgacgtgtatgttcagtaacataac 100  Q
    |||||| |||| |||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||    
T  20873967 tgagtacatatataaattttatggcgttatatttggtgagtttcttcatgcatcatatcatgattaggattctggtgacgtgtatg-tcattaacagaac 20874065  T
Q  101 tatgacatacaatattggtgagtaga 126  Q
    | | ||||||||| ||||||||||||    
T  20874066 tctaacatacaattttggtgagtaga 20874091  T

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Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 17458077 - 17457940
Alignment:
Q  1 tgagtaaatatgtaaattatatggtgttgtatttggtgagtttcttcatgcatcatatcatgattaggattttgg------------tgacgtgtatgtt 88  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||            |||||||||||||    
T  17458077 tgagtaaatatataaattctatggtgttgtatttggtaagtttcttcatgcatcatatcatgattaggattctggtaacgattctaatgacgtgtatgtt 17457978  T
Q  89 cagtaacataactatgacatacaatattggtgagtaga 126  Q
    ||||||||||||| ||||||||||| ||| ||||||||    
T  17457977 cagtaacataactctgacatacaattttgatgagtaga 17457940  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 24563016 - 24562937
Alignment:
Q  1 tgagtaaatatgtaaattatatggtgttgtatttggtgagtttcttcatgcatcatatcatgattaggattttggtgacg 80  Q
    |||||||||||||||||| |||||||||||||||  ||| ||| |||||||||||||||||||||| |||| ||||||||    
T  24563016 tgagtaaatatgtaaattctatggtgttgtatttaatgaatttattcatgcatcatatcatgattaagattctggtgacg 24562937  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 24604050 - 24603971
Alignment:
Q  1 tgagtaaatatgtaaattatatggtgttgtatttggtgagtttcttcatgcatcatatcatgattaggattttggtgacg 80  Q
    |||||||||||||||||| |||||||||||||||  ||| ||| |||||||||||||||||||||| |||| ||||||||    
T  24604050 tgagtaaatatgtaaattctatggtgttgtatttaatgaatttattcatgcatcatatcatgattaagattctggtgacg 24603971  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 153
Target Start/End: Complemental strand, 22696282 - 22696209
Alignment:
Q  80 gtgtatgttcagtaacataactatgacatacaatattggtgagtagaaatggtaccacatgcatataggtgata 153  Q
    ||||||| ||||||||||||  |||||||||||  ||||||||||||||  |||||||||||||||||||||||    
T  22696282 gtgtatgctcagtaacataataatgacatacaaatttggtgagtagaaacagtaccacatgcatataggtgata 22696209  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 20850474 - 20850539
Alignment:
Q  80 gtgtatgttcagtaacataactatgacatac-aatattggtgagtagaaatggtaccacatgcata 144  Q
    ||||||||||||||||| |||| |||||||| || |||| ||||||||| ||||||||||||||||    
T  20850474 gtgtatgttcagtaacacaactctgacatacaaaaattgatgagtagaattggtaccacatgcata 20850539  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 25932940 - 25932981
Alignment:
Q  85 tgttcagtaacataactatgacatacaatattggtgagtaga 126  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  25932940 tgttcagtaacataactctgacatacaaaattggtgagtaga 25932981  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 26158830 - 26158886
Alignment:
Q  86 gttcagtaacataactatgacatacaatattggtgagtagaaatggtaccacatgcat 143  Q
    ||||| |||||||||| | |||||||| |||||||||||| | |||||||||||||||    
T  26158830 gttcaataacataactctaacatacaaaattggtgagtag-attggtaccacatgcat 26158886  T

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Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 72 - 266
Target Start/End: Original strand, 6714918 - 6715112
Alignment:
Q  72 ttggtgacgtgtatgttcagtaacataactatgacatacaatattggtgagtagaaatggtaccacatgcatataggtgataggggtgtcttgcataatg 171  Q
    ||||||| ||||||| ||||||| |||||| ||||||||||||||| || |||||||||||| ||| ||||| ||||||||| |  |   ||| ||||||    
T  6714918 ttggtgatgtgtatgctcagtaatataactttgacatacaatattgatgtgtagaaatggtatcacgtgcatttaggtgataagaataaattgtataatg 6715017  T
Q  172 catataaatgttgatgtgaataactgatgttcattgtgtatgatgtgtgtgaatggtgatgt-taaaattggtgagagttatg-atgatgtgcttaa 266  Q
    ||||| ||||||||||||| |||||| |||   ||||| ||||  |||||||||||||||||  ||||||| |||||||| || |||||||||||||    
T  6715018 catatgaatgttgatgtgattaactggtgtgtgttgtgaatga--tgtgtgaatggtgatgtcaaaaattgatgagagttgtgaatgatgtgcttaa 6715112  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 143
Target Start/End: Original strand, 11776622 - 11776686
Alignment:
Q  80 gtgtatgttcagtaacataactatgacatacaat-attggtgagtagaaatggtaccacatgcat 143  Q
    ||||||||||||||| |||||| ||||||||||| | || |||||||||||||||  ||||||||    
T  11776622 gtgtatgttcagtaatataactttgacatacaataaatgatgagtagaaatggtattacatgcat 11776686  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 9865734 - 9865802
Alignment:
Q  80 gtgtatgttcagtaacataactatgacatacaatat-tggtgagtagaaatggtaccacatgcatatag 147  Q
    |||||||||| |||||| |||| ||||||| ||||  ||  ||||| ||||||||||||||||||||||    
T  9865734 gtgtatgttctgtaacacaactctgacataaaataaatgacgagtataaatggtaccacatgcatatag 9865802  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 126
Target Start/End: Complemental strand, 977505 - 977412
Alignment:
Q  30 tatttggtgagtttcttcatgcatcatatcatgattaggattttggtgacgtgtatgttcagtaacataactatgacatacaatattggtgagtaga 126  Q
    |||||||||||||||||||||||| || || || | | |||| ||||||| ||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  977505 tatttggtgagtttcttcatgcat-at-tcttg-tgacgattctggtgacatgtatgttcagtaacataactctgatatacaattttggtgagtaga 977412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 8885982 - 8885923
Alignment:
Q  20 tatggtgttgtatttggtgagttt-cttcatgcatcatatcatgattaggattttggtga 78  Q
    |||||||||||  ||| ||||||| |||||||||||||||||| ||||||||| ||||||    
T  8885982 tatggtgttgtcattgatgagttttcttcatgcatcatatcattattaggattctggtga 8885923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 19007412 - 19007343
Alignment:
Q  81 tgtatgttcagtaacataactatgacatacaatattggtgagtagaaatggtaccacatgcatataggtg 150  Q
    |||||| | |||||||||||| | |||||||| ||||||||||| || ||||||||||| ||||||||||    
T  19007412 tgtatgcttagtaacataactctaacatacaaaattggtgagtaaaattggtaccacatacatataggtg 19007343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 10079309 - 10079433
Alignment:
Q  33 ttggtgagtttcttcatgcatcatatcatgattagga-ttttggtgac--------gtgtatgttcagtaacataactatgacat-acaatattggtgag 122  Q
    ||||||||| || |||||||||||||||| ||||||| |||||||||         ||||||||||||||||| |||| |||||| | || ||| |||||    
T  10079309 ttggtgagtgtcctcatgcatcatatcattattaggacttttggtgatattggtgagtgtatgttcagtaacacaactctgacataaaaaaattagtgag 10079408  T
Q  123 tagaaatggtaccacatgcatatag 147  Q
    ||||| |||||||| ||||||||||    
T  10079409 tagaattggtaccatatgcatatag 10079433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 24114515 - 24114574
Alignment:
Q  88 tcagtaacataactatgacatacaatattggtgagtagaaatggtaccacatgcatatagg 148  Q
    |||||||||||||| | |||||||| |||||||||||| | ||||||||||||||| ||||    
T  24114515 tcagtaacataactctaacatacaaaattggtgagtag-attggtaccacatgcatttagg 24114574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 17521100 - 17521169
Alignment:
Q  87 ttcagtaacataactatgacatacaata-ttggtgagtagaaatggtaccacatgcatataggtgatagg 155  Q
    |||||||||| |||| |||||||||| | ||| ||||||||| || |||||| ||||||||||| |||||    
T  17521100 ttcagtaacacaactctgacatacaaaaattgatgagtagaattgataccacgtgcatataggtaatagg 17521169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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