View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3185_low_14 (Length: 388)
Name: NF3185_low_14
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3185_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 17 - 384
Target Start/End: Original strand, 23410803 - 23411170
Alignment:
| Q |
17 |
atccaaaaccaaaactgtctaattttaaatatgagtaccagttttacaaaacggtgaaataggaagacaaaactgcaaggcnnnnnnnnnnnngaaagac |
116 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23410803 |
atccaaaaccaaaactgtctaattttaaatatgagaaccagttttacaaaacggtgaaataggaagacaaaactgcaaggcaaaaacaaaaaagaaagac |
23410902 |
T |
|
| Q |
117 |
agagagaaacatggatcatgtagacgatgagtaggtcagaaagcacaatggagaaggaaatagaaacattcctcagaaaactttccttagtcgccatagc |
216 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23410903 |
agagagaaacatggatcatgtagacgatgtgtaggtcagaaagcacaatggagaaggaaatagaaacattcctcagaaaactttccttagtcgccatagc |
23411002 |
T |
|
| Q |
217 |
catagcttcactaacactcctcattctcttcctccaaacccctaacacctgcgtcccatcagaagccccatccaaaccccacctccgcttccccaaatcc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23411003 |
catagcttcactaacactcctcattctcttcctccaaatccccaacacccgcgtcccatcagaagcaccatccaaaccccacctccgcttccccaaatcc |
23411102 |
T |
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| Q |
317 |
acctgcgacttcacctccacccgcctccacctcccctcccacaagaaaaacaaccgtctctgctcctc |
384 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23411103 |
acctgcgacttcacctccacccacctccacctcccctcccacaagaaaaacaaccgtctctggtcctc |
23411170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 163 - 384
Target Start/End: Original strand, 16538307 - 16538528
Alignment:
| Q |
163 |
aatggagaaggaaatagaaacattcctcagaaaactttccttagtcgccatagccatagcttcactaacactcctcattctcttcctccaaacccctaac |
262 |
Q |
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||||||||| ||||| || |||||||| |||||||||||| ||| | | ||||||||||||||| |||||||| | ||| ||||| ||||| | |
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| T |
16538307 |
aatggagaaagaaattgacacattccttagaaaactttccatagcctctatagccatagcttcagtaacactcatatctctattccttatcacccccgat |
16538406 |
T |
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| Q |
263 |
acctgcgtcccatcagaagccccatccaaaccccacctccgcttccccaaatccacctgcgacttcacctccacccgcctccacctcccctcccacaaga |
362 |
Q |
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|| ||||| ||| | ||||| || | ||||||||| |||||||||| |||||||||||||||||||||||| |||||| | |||||||||| |||||| |
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| T |
16538407 |
acatgcgttccacccgaagcgccgttaaaaccccacttccgcttccctaaatccacctgcgacttcacctcctcccgccccagcctcccctccgacaaga |
16538506 |
T |
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| Q |
363 |
aaaacaaccgtctctgctcctc |
384 |
Q |
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|||||||||||||||| ||||| |
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| T |
16538507 |
aaaacaaccgtctctggtcctc |
16538528 |
T |
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