View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3185_low_15 (Length: 359)
Name: NF3185_low_15
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3185_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 39134606 - 39134272
Alignment:
| Q |
20 |
aaaggcacagttacaaatctaccacattcaccagttcaat--gtggcaactaatagacatatatctccatataaagctcatacaaaacaactaagaaaga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39134606 |
aaaggcacagttacaaatctaccacattcaccagttcaatatgtggcaactaatagacatatatctccatataaagctcatacaaaacaactaagaaaga |
39134507 |
T |
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| Q |
118 |
aatgactacctgaacaattcctttgtcagccaagtccttatcttcaagcctatactcatgcataacccaatcagttcgatcaccacgcggtgattttcca |
217 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39134506 |
aatgactacctgaacagttcctttgtcagccaagtccttatcttcaagcctatactcatgcataacccaatcagttcgatcaccacgtggtgattttcca |
39134407 |
T |
|
| Q |
218 |
gtgtgaaatattagggttttaatcatccccacagtttgattattttgttgaacagctctatcctgaccagtagctttccaaaacccaacttccgtagctc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39134406 |
gtgtgaaatattagggttttaatcatccccacagtttgattattttgttgaacagctctatcctgaccagtagctttccaaaacccaatttccgtagctc |
39134307 |
T |
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| Q |
318 |
gtttcatccttggcccacttcgatacttcatctca |
352 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
39134306 |
gtttcatccttggcccacttcgatacttcttctca |
39134272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 125 - 352
Target Start/End: Original strand, 26581395 - 26581622
Alignment:
| Q |
125 |
acctgaacaattcctttgtcagccaagtccttatcttcaagcctatactcatgcataacccaatcagttcgatcaccacgcggtgattttccagtgtgaa |
224 |
Q |
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||||||||||||||||| ||||| | |||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||| ||||||||| |||| |
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| T |
26581395 |
acctgaacaattcctttatcagctaggtccttatcttcaagcctatactcgtgcataacccaatcagtacgatccccacgaggtgcttttccagtatgaa |
26581494 |
T |
|
| Q |
225 |
atattagggttttaatcatccccacagtttgattattttgttgaacagctctatcctgaccagtagctttccaaaacccaacttccgtagctcgtttcat |
324 |
Q |
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|||| || ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| ||||| |
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| T |
26581495 |
atatcagtgttttaatcatccccacagtttgattattctgttgaacagctctatccttaccagtagctttccaaaaccctatttccgtagctcgattcat |
26581594 |
T |
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| Q |
325 |
ccttggcccacttcgatacttcatctca |
352 |
Q |
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||| | |||| ||| ||||||| ||||| |
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| T |
26581595 |
cctcgacccatttccatacttcttctca |
26581622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 28663437 - 28663478
Alignment:
| Q |
155 |
ttatcttcaagcctatactcatgcataacccaatcagttcga |
196 |
Q |
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| T |
28663437 |
ttatcatcaaggcgatactcatgcataacccaatcagttcga |
28663478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 43889137 - 43889170
Alignment:
| Q |
170 |
tactcatgcataacccaatcagttcgatcaccac |
203 |
Q |
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| T |
43889137 |
tactcatgcataacccaatcagttcgctcaccac |
43889170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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