View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3185_low_16 (Length: 356)
Name: NF3185_low_16
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3185_low_16 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 40945320 - 40945675
Alignment:
| Q |
1 |
agaacttcatccttcaagattttgtgaaaaagacttattgaaagtggttgatagggagcatgtatttgcttatattgatgatccttgtagtgctacatac |
100 |
Q |
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| T |
40945320 |
agaacttcatccttcaagattttgtgaaaaagacttattgaaagtggttgatagagagcatgtatttgcttatattgatgatccttgtagtgctacatac |
40945419 |
T |
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| Q |
101 |
ccattgagtcaaaaactcaggcaagtgttggtagatcatgcattagttaatggagagagtgagaagaatttgaacacttcaatctttcaaaagattgcaa |
200 |
Q |
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| T |
40945420 |
ccattgagtcaaaaactcaggcaagtgttggtagatcatgcattagttaatggagagagtgagaagaatttgaacacttcaatctttcaaaagattgcaa |
40945519 |
T |
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| Q |
201 |
cttttgaggaagagttgaagagcctcttgccaaaagaggttgaaagtgcaaggaccgcatatgagagtggaaacccaacaattccaaataagatcaaggg |
300 |
Q |
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| T |
40945520 |
cttttgaggaagagttgaagagcctcttgccaaaagaggttgaaagtgcaaggaccgcatatgagagtggaaacccaacaattccaaacaagatcaatgg |
40945619 |
T |
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| Q |
301 |
atgcagatcctatccactttacaaatttgtgagagaggagctaggaactggtttac |
356 |
Q |
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| T |
40945620 |
atgcagatcttatccactttacaagtttgttagagaggagttgggaactggtttac |
40945675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 40959285 - 40959640
Alignment:
| Q |
1 |
agaacttcatccttcaagattttgtgaaaaagacttattgaaagtggttgatagggagcatgtatttgcttatattgatgatccttgtagtgctacatac |
100 |
Q |
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| T |
40959285 |
agaacttcaaccttcaagattatgtgaaaaagacttattgaaagtggttgatagagagcatgtatttgcttatattgatgatccttgtagtgctacatac |
40959384 |
T |
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| Q |
101 |
ccattgagtcaaaaactcaggcaagtgttggtagatcatgcattagttaatggagagagtgagaagaatttgaacacttcaatctttcaaaagattgcaa |
200 |
Q |
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| T |
40959385 |
ccattgagtcaaaaactcaggcaagtgttggtagatcatgcattagttaatggagagagtgagaagaatttgaacacttcaatctttcaaaagattgcaa |
40959484 |
T |
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| Q |
201 |
cttttgaggaagagttgaagagcctcttgccaaaagaggttgaaagtgcaaggaccgcatatgagagtggaaacccaacaattccaaataagatcaaggg |
300 |
Q |
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| T |
40959485 |
cttttgaggaagagttgaagagcctcttgccaaaagaggttgaaagtgcaaggaccgcatatgagagtggaaacccaacaattccaaacaagatcaatgg |
40959584 |
T |
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| Q |
301 |
atgcagatcctatccactttacaaatttgtgagagaggagctaggaactggtttac |
356 |
Q |
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| T |
40959585 |
atgcagatcttatccactttacaagtttgttagagaggagttgggaactggtttac |
40959640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 28184099 - 28183836
Alignment:
| Q |
1 |
agaacttcatccttcaagattttgtgaaaaagacttattgaaagtggttgatagggagcatgtatttgcttatattgatgatccttgtagtgctacatac |
100 |
Q |
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|||||||||||||||||||||||| || ||||| || | ||||| || || |||||| |||| ||||| ||| |||||||||||| ||||||||| |
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| T |
28184099 |
agaacttcatccttcaagattttgcgagaaagatttgctcaaagttgtcgacagggagtatgtgtttgcctatgctgatgatccttgcctagctacatac |
28184000 |
T |
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| Q |
101 |
ccattgagtcaaaaactcaggcaagtgttggtagatcatgcattagttaatggagagagtgagaagaatttgaacacttcaatctttcaaaagattgcaa |
200 |
Q |
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|| |||| ||||| | || |||||| | || |||||||||||||| ||| || | |||||||||| |||||| |||||||| ||||||||||||| |
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| T |
28183999 |
cctttgatgcaaaagttgagacaagtgcttgtggatcatgcattagtgaataccgaaggagagaagaattcgaacacatcaatcttccaaaagattgcaa |
28183900 |
T |
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| Q |
201 |
cttttgaggaagagttgaagagcctcttgccaaaagaggttgaaagtgcaaggaccgcatatga |
264 |
Q |
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| T |
28183899 |
catttgaggatgaattgaaggctatcttgccaaaggaagttgaaagtgcaaggacagcatatga |
28183836 |
T |
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