View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3185_low_18 (Length: 296)
Name: NF3185_low_18
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3185_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 185 - 280
Target Start/End: Complemental strand, 7908568 - 7908473
Alignment:
| Q |
185 |
tttgatactcactgattcatgacttgagataaacggacctgcagaatgttttggagacatttcactctatcctccgctatttgcatatcatctctg |
280 |
Q |
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| T |
7908568 |
tttgatactcactgattcatgacttgagataaacggacctgcagaatgttttggagacatttcactatatcctccgctatttgcatatcatctctg |
7908473 |
T |
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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 7352851 - 7352923
Alignment:
| Q |
22 |
taatccattcatttacaaccatttgagtaagaaactatctgtgatttctaattaaacacaaaaaatagcatcaaaat |
98 |
Q |
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| T |
7352851 |
taatccattcatttacaaccatttgagtaagaaacaatctctgatttc----tgaacacaaacaatagcatcaaaat |
7352923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 7332107 - 7332139
Alignment:
| Q |
25 |
tccattcatttacaaccatttgagtaagaaact |
57 |
Q |
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| T |
7332107 |
tccattcatttacaaccatttgagtaagaaact |
7332139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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