View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3185_low_24 (Length: 254)
Name: NF3185_low_24
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3185_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 45103803 - 45104043
Alignment:
| Q |
1 |
tcaaacaagtactgatgatgaagaagagttcttgagagacataattcttcagcaacctgttgcatattctggaagcagtttatcatcttctagtgagatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45103803 |
tcaaacaagtactgatgatgaagaagagttcttgagagacataattcttcagcaacctgttacatattctggaagcagtttatcatcttctagtgagatg |
45103902 |
T |
|
| Q |
101 |
gacggttcagatagctcggggaaaaagcttcatccttcatcatcaccgttcactccaaggacattcattctctcttttgataaatctaccataataccag |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| || |||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45103903 |
gacggttcagatagctcggggaaaaaacttcatcttttatcaacaccatccactccaaggacattcattctctcttttgataaatctaccataataccag |
45104002 |
T |
|
| Q |
201 |
ctactactacaccagaatcagaagaagtgtcaagaccaaag |
241 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
45104003 |
ctactactacaccagaatcagaagaagtaccaagaacaaag |
45104043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 45130432 - 45130669
Alignment:
| Q |
1 |
tcaaacaagtactgatgatgaagaagagttcttgagagacataattcttcagcaacctgttgcatattctggaagcagtttatcatcttctagtgagatg |
100 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | ||||||| |||| ||||||| |
|
|
| T |
45130432 |
tcaaactagtgctgatgatgaagaagagttcttgagagacataatccttcagcaacctgttacatattctggaagta---tatcatcctctaatgagatg |
45130528 |
T |
|
| Q |
101 |
gacggttcagatagctcggggaaaaagcttcatccttcatcatcaccgttcactccaaggacattcattctctcttttgataaatctaccataataccag |
200 |
Q |
| |
|
|| || |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45130529 |
gatggctcagattgctcaaagaaaaagcttcatccttcatcatcaccgttcactccaaggacattcattctctcttttgataaatctaccataataccag |
45130628 |
T |
|
| Q |
201 |
ctactactacaccagaatcagaagaagtgtcaagaccaaag |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45130629 |
ctactactacaccagaatcagaagaagtgtcaataccaaag |
45130669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University