View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3185_low_25 (Length: 254)
Name: NF3185_low_25
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3185_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 16140152 - 16139905
Alignment:
| Q |
1 |
tacagaaacaaacaatgaagaaaatcataacaaaagaagattt-aaacataagactactttcgcaatttttatttgatcatgtaaggattggttatctat |
99 |
Q |
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| T |
16140152 |
tacagaaacaaacaatggagaaaatcataacaaaagaagattttaaacataagactactttcgcaatttttatttgatcatgtaaggattggttatctat |
16140053 |
T |
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| Q |
100 |
gaattgacttttattttttcactggttacctaattaag---nnnnnnnngtttaaaaggaggaaagaagccaccaaaaatgataatcaattgcagataaa |
196 |
Q |
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| T |
16140052 |
gaattgacttttattttttcactggttacctaattaagaaaaaaaaaaagtttaaaaggagtaaagatgccaccaaaaatgataatcaattgcagataaa |
16139953 |
T |
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| Q |
197 |
gattaatgtcactttttgaatagaatgaagttgatgttaacgtctctg |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16139952 |
gattaatgtcactttttgaatagaatgaagttgatgttaacgtctctg |
16139905 |
T |
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