View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3185_low_29 (Length: 247)
Name: NF3185_low_29
Description: NF3185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3185_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 23676030 - 23675807
Alignment:
| Q |
20 |
agttatgtttatgtgttattgtatatgacaagtttggaacgtaaattaaattcaatttagaaacgaatggtagtaaatagttgttggaggtattttggtc |
119 |
Q |
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| T |
23676030 |
agttatgtttatgtgttattgtatatgacaagtctggaacgtaaattaaattcagtttggaaacgaacggtagtaaatagttgttggaggtattttggtc |
23675931 |
T |
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| Q |
120 |
aacttgaggtgcttgtgaaaaatcgataggtgtctagagagaagttttcatgtgggtttgagtcaagtgtataggcttgcataaataaactcttataccg |
219 |
Q |
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| T |
23675930 |
aacttgaagtgcctgtgaaaaatcgataggtgtctagagagaaattttcatgtgggtttgagtcaagtgtataggcttgcataaataaactcttataccg |
23675831 |
T |
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| Q |
220 |
atcatttggagatcacaaaacaaa |
243 |
Q |
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|||||||||||||||||||||||| |
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| T |
23675830 |
atcatttggagatcacaaaacaaa |
23675807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 26457432 - 26457656
Alignment:
| Q |
19 |
gagttatgtttatgtgttattgtatatgacaagtttggaacgtaaattaaattcaatttagaaacgaatggtagtaaatagttgttggaggtattttggt |
118 |
Q |
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| T |
26457432 |
gagttatgtttatgtgttagtgtatatgataggtctagaactaaaattaaatgtagtttggaaacgaatggtagttaattgttgttggaggtattttggt |
26457531 |
T |
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| Q |
119 |
caacttgaggtgcttgtgaaaaatcgataggtgtctagagagaagttttcatgtgggtttgagtcaagtgtataggcttgcataaataaactcttatacc |
218 |
Q |
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| T |
26457532 |
caacttgaggtgcctatgaaaaaacactaggtgcctaaagagaaattttcgtgtgggtttgagtcaagtgtatgagcttgcataaatgaactcttatacc |
26457631 |
T |
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| Q |
219 |
gatcatttggagatcacaaaacaaa |
243 |
Q |
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||||||||||||||||||||||||| |
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| T |
26457632 |
gatcatttggagatcacaaaacaaa |
26457656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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